Gene : Glyma.07G195900 G. max Wm82.a2.v1
Defline:  (1 of 1) PF00004//PF02359//PF02933//PF07724 - ATPase family associated with various cellular activities (AAA) (AAA) // Cell division protein 48 (CDC48), N-terminal domain (CDC48_N) // Cell division protein 48 (CDC48), domain 2 (CDC48_2) // AAA domain (Cdc48 subfamily) (AAA_2) Genomic Order:  1959
Name:  ? Glyma.07G195900 Secondary Identifier:  ? PAC:30494961
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G195900 0.5kb upstream 0.5kb upstream 12572 true Chr07: 36437193-36449764 Glycine max
Glyma.07G195900 0.5kb upstream 0.5kb upstream 500 false Chr07: 36449265-36449764 Glycine max
Glyma.07G195900 0.5kb downstream 0.5kb downstream 12572 true Chr07: 36436693-36449264 Glycine max
Glyma.07G195900 0.5kb downstream 0.5kb downstream 500 false Chr07: 36436693-36437192 Glycine max
Glyma.07G195900 1.0kb upstream 1.0kb upstream 13072 true Chr07: 36437193-36450264 Glycine max
Glyma.07G195900 1.0kb upstream 1.0kb upstream 1000 false Chr07: 36449265-36450264 Glycine max
Glyma.07G195900 1.0kb downstream 1.0kb downstream 13072 true Chr07: 36436193-36449264 Glycine max
Glyma.07G195900 1.0kb downstream 1.0kb downstream 1000 false Chr07: 36436193-36437192 Glycine max
Glyma.07G195900 2.0kb upstream 2.0kb upstream 14072 true Chr07: 36437193-36451264 Glycine max
Glyma.07G195900 2.0kb upstream 2.0kb upstream 2000 false Chr07: 36449265-36451264 Glycine max
Glyma.07G195900 2.0kb downstream 2.0kb downstream 14072 true Chr07: 36435193-36449264 Glycine max
Glyma.07G195900 2.0kb downstream 2.0kb downstream 2000 false Chr07: 36435193-36437192 Glycine max
Glyma.07G195900 5.0kb upstream 5.0kb upstream 17072 true Chr07: 36437193-36454264 Glycine max
Glyma.07G195900 5.0kb upstream 5.0kb upstream 5000 false Chr07: 36449265-36454264 Glycine max
Glyma.07G195900 5.0kb downstream 5.0kb downstream 17072 true Chr07: 36432193-36449264 Glycine max
Glyma.07G195900 5.0kb downstream 5.0kb downstream 5000 false Chr07: 36432193-36437192 Glycine max
Glyma.07G195900 10.0kb upstream 10.0kb upstream 22072 true Chr07: 36437193-36459264 Glycine max
Glyma.07G195900 10.0kb upstream 10.0kb upstream 10000 false Chr07: 36449265-36459264 Glycine max
Glyma.07G195900 10.0kb downstream 10.0kb downstream 22072 true Chr07: 36427193-36449264 Glycine max
Glyma.07G195900 10.0kb downstream 10.0kb downstream 10000 false Chr07: 36427193-36437192 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303184 5265 Fabidae View MSA
124065880 5270 Rosid View MSA
123748878 5271 Pentapetalae View MSA
122787277 5272 Eudicot View MSA
122044573 5273 Angiosperm View MSA
121350302 5274 Embryophyte View MSA
123424602 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.0061 0.0 44.9458   Low
cufflinks 13.6377 0.0 40.8468    
cufflinks 13.6253 0.0 46.4285    
cufflinks 27.818 0.0 106.147 High High
cufflinks 24.0504 0.0 87.5816 High High
cufflinks 20.3299 0.0 63.4311    
cufflinks 15.5517 0.0 52.9783    
cufflinks 23.9881 0.0 88.8115 High High
cufflinks 14.6563 0.0 50.242    
cufflinks 2.835       High
cufflinks 1.097       Low
cufflinks 1.606        
cufflinks 2.93       High
cufflinks 3.429       High
cufflinks 0.951       Low
cufflinks 1.489        
cufflinks 1.139        
cufflinks 2.561       High
cufflinks 1.956        
cufflinks 1.145        
cufflinks 1.676        
cufflinks 1.3        
cufflinks 1.335        
cufflinks 1.32        
cufflinks 1.205        
cufflinks 1.738        

0 Strain