Gene : Glyma.07G220800 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR14152 - SQUAMOUS CELL CARCINOMA ANTIGEN RECOGNISED BY CYTOTOXIC T LYMPHOCYTES Genomic Order:  2208
Name:  ? Glyma.07G220800 Secondary Identifier:  ? PAC:30494129
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Ontology Annotation Displayer

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Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G220800 0.5kb upstream 0.5kb upstream 32256 true Chr07: 39558650-39590905 Glycine max
Glyma.07G220800 0.5kb upstream 0.5kb upstream 500 false Chr07: 39558650-39559149 Glycine max
Glyma.07G220800 0.5kb downstream 0.5kb downstream 32256 true Chr07: 39559150-39591405 Glycine max
Glyma.07G220800 0.5kb downstream 0.5kb downstream 500 false Chr07: 39590906-39591405 Glycine max
Glyma.07G220800 1.0kb upstream 1.0kb upstream 32756 true Chr07: 39558150-39590905 Glycine max
Glyma.07G220800 1.0kb upstream 1.0kb upstream 1000 false Chr07: 39558150-39559149 Glycine max
Glyma.07G220800 1.0kb downstream 1.0kb downstream 32756 true Chr07: 39559150-39591905 Glycine max
Glyma.07G220800 1.0kb downstream 1.0kb downstream 1000 false Chr07: 39590906-39591905 Glycine max
Glyma.07G220800 2.0kb upstream 2.0kb upstream 33756 true Chr07: 39557150-39590905 Glycine max
Glyma.07G220800 2.0kb upstream 2.0kb upstream 2000 false Chr07: 39557150-39559149 Glycine max
Glyma.07G220800 2.0kb downstream 2.0kb downstream 33756 true Chr07: 39559150-39592905 Glycine max
Glyma.07G220800 2.0kb downstream 2.0kb downstream 2000 false Chr07: 39590906-39592905 Glycine max
Glyma.07G220800 5.0kb upstream 5.0kb upstream 36756 true Chr07: 39554150-39590905 Glycine max
Glyma.07G220800 5.0kb upstream 5.0kb upstream 5000 false Chr07: 39554150-39559149 Glycine max
Glyma.07G220800 5.0kb downstream 5.0kb downstream 36756 true Chr07: 39559150-39595905 Glycine max
Glyma.07G220800 5.0kb downstream 5.0kb downstream 5000 false Chr07: 39590906-39595905 Glycine max
Glyma.07G220800 10.0kb upstream 10.0kb upstream 41756 true Chr07: 39549150-39590905 Glycine max
Glyma.07G220800 10.0kb upstream 10.0kb upstream 10000 false Chr07: 39549150-39559149 Glycine max
Glyma.07G220800 10.0kb downstream 10.0kb downstream 41756 true Chr07: 39559150-39600905 Glycine max
Glyma.07G220800 10.0kb downstream 10.0kb downstream 10000 false Chr07: 39590906-39600905 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309710 5265 Fabidae View MSA
124062674 5270 Rosid View MSA
123746922 5271 Pentapetalae View MSA
122786640 5272 Eudicot View MSA
122041665 5273 Angiosperm View MSA
121345433 5274 Embryophyte View MSA
123424851 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.28022 0.0 10.3798    
cufflinks 3.94384 0.0 12.395    
cufflinks 2.40447 0.0 7.98119   Low
cufflinks 3.48251 0.0 12.6745    
cufflinks 4.28219 0.0 13.2796   High
cufflinks 2.67932 0.0 8.80844   Low
cufflinks 3.4756 0.0 14.1597    
cufflinks 3.18873 0.0 11.7802    
cufflinks 3.9293 0.0 12.1413    
cufflinks 0.086     Low  
cufflinks 0.025     Low Low
cufflinks 0.08     Low  
cufflinks 0.125       High
cufflinks 0.151       High
cufflinks 0.047     Low  
cufflinks 0.084     Low  
cufflinks 0.047     Low  
cufflinks 0.1     Low  
cufflinks 0.102        
cufflinks 0.074     Low  
cufflinks 0.04     Low Low
cufflinks 0.089     Low  
cufflinks 0.115        
cufflinks 0.036     Low Low
cufflinks 0.084     Low  
cufflinks 0.051     Low  

0 Strain