Gene : Glyma.07G252600 G. max Wm82.a2.v1
Defline:  (1 of 13) 2.2.1.7 - 1-deoxy-D-xylulose-5-phosphate synthase / DXP-synthase Genomic Order:  2526
Name:  ? Glyma.07G252600 Secondary Identifier:  ? PAC:30491712
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7560 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G252600 0.5kb upstream 0.5kb upstream 4334 true Chr07: 43004838-43009171 Glycine max
Glyma.07G252600 0.5kb upstream 0.5kb upstream 500 false Chr07: 43008672-43009171 Glycine max
Glyma.07G252600 0.5kb downstream 0.5kb downstream 4334 true Chr07: 43004338-43008671 Glycine max
Glyma.07G252600 0.5kb downstream 0.5kb downstream 500 false Chr07: 43004338-43004837 Glycine max
Glyma.07G252600 1.0kb upstream 1.0kb upstream 4834 true Chr07: 43004838-43009671 Glycine max
Glyma.07G252600 1.0kb upstream 1.0kb upstream 1000 false Chr07: 43008672-43009671 Glycine max
Glyma.07G252600 1.0kb downstream 1.0kb downstream 4834 true Chr07: 43003838-43008671 Glycine max
Glyma.07G252600 1.0kb downstream 1.0kb downstream 1000 false Chr07: 43003838-43004837 Glycine max
Glyma.07G252600 2.0kb upstream 2.0kb upstream 5834 true Chr07: 43004838-43010671 Glycine max
Glyma.07G252600 2.0kb upstream 2.0kb upstream 2000 false Chr07: 43008672-43010671 Glycine max
Glyma.07G252600 2.0kb downstream 2.0kb downstream 5834 true Chr07: 43002838-43008671 Glycine max
Glyma.07G252600 2.0kb downstream 2.0kb downstream 2000 false Chr07: 43002838-43004837 Glycine max
Glyma.07G252600 5.0kb upstream 5.0kb upstream 8834 true Chr07: 43004838-43013671 Glycine max
Glyma.07G252600 5.0kb upstream 5.0kb upstream 5000 false Chr07: 43008672-43013671 Glycine max
Glyma.07G252600 5.0kb downstream 5.0kb downstream 8834 true Chr07: 42999838-43008671 Glycine max
Glyma.07G252600 5.0kb downstream 5.0kb downstream 5000 false Chr07: 42999838-43004837 Glycine max
Glyma.07G252600 10.0kb upstream 10.0kb upstream 13834 true Chr07: 43004838-43018671 Glycine max
Glyma.07G252600 10.0kb upstream 10.0kb upstream 10000 false Chr07: 43008672-43018671 Glycine max
Glyma.07G252600 10.0kb downstream 10.0kb downstream 13834 true Chr07: 42994838-43008671 Glycine max
Glyma.07G252600 10.0kb downstream 10.0kb downstream 10000 false Chr07: 42994838-43004837 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310498 5265 Fabidae View MSA
124069132 5270 Rosid View MSA
123739716 5271 Pentapetalae View MSA
122785691 5272 Eudicot View MSA
122043887 5273 Angiosperm View MSA
121350299 5274 Embryophyte View MSA
123428527 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 39.6472 0.0 197.085 High High
cufflinks 23.0934 0.0 101.272 High  
cufflinks 34.8574 0.0 167.293 High High
cufflinks 18.7594 0.0 79.1333    
cufflinks 10.4395 0.0 43.1212    
cufflinks 5.03743 0.0 18.6825   Low
cufflinks 10.8141 0.0 45.0176    
cufflinks 15.2443 0.0 63.5775    
cufflinks 8.25565 0.0 35.1129    
cufflinks 3.817        
cufflinks 0.876       Low
cufflinks 6.435        
cufflinks 2.636        
cufflinks 1.932        
cufflinks 0.751       Low
cufflinks 24.564     High High
cufflinks 0.551       Low
cufflinks 4.456        
cufflinks 7.671     High  
cufflinks 27.9     High High
cufflinks 1.921        
cufflinks 26.669     High High
cufflinks 12.313     High  
cufflinks 1.764        
cufflinks 30.568     High High
cufflinks 1.089        

0 Strain