Gene : Glyma.07G249400 G. max Wm82.a2.v1
Defline:  (1 of 24) PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  2494
Name:  ? Glyma.07G249400 Secondary Identifier:  ? PAC:30493638
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G249400 0.5kb upstream 0.5kb upstream 2334 true Chr07: 42745730-42748063 Glycine max
Glyma.07G249400 0.5kb upstream 0.5kb upstream 500 false Chr07: 42745730-42746229 Glycine max
Glyma.07G249400 0.5kb downstream 0.5kb downstream 2334 true Chr07: 42746230-42748563 Glycine max
Glyma.07G249400 0.5kb downstream 0.5kb downstream 500 false Chr07: 42748064-42748563 Glycine max
Glyma.07G249400 1.0kb upstream 1.0kb upstream 2834 true Chr07: 42745230-42748063 Glycine max
Glyma.07G249400 1.0kb upstream 1.0kb upstream 1000 false Chr07: 42745230-42746229 Glycine max
Glyma.07G249400 1.0kb downstream 1.0kb downstream 2834 true Chr07: 42746230-42749063 Glycine max
Glyma.07G249400 1.0kb downstream 1.0kb downstream 1000 false Chr07: 42748064-42749063 Glycine max
Glyma.07G249400 2.0kb upstream 2.0kb upstream 3834 true Chr07: 42744230-42748063 Glycine max
Glyma.07G249400 2.0kb upstream 2.0kb upstream 2000 false Chr07: 42744230-42746229 Glycine max
Glyma.07G249400 2.0kb downstream 2.0kb downstream 3834 true Chr07: 42746230-42750063 Glycine max
Glyma.07G249400 2.0kb downstream 2.0kb downstream 2000 false Chr07: 42748064-42750063 Glycine max
Glyma.07G249400 5.0kb upstream 5.0kb upstream 6834 true Chr07: 42741230-42748063 Glycine max
Glyma.07G249400 5.0kb upstream 5.0kb upstream 5000 false Chr07: 42741230-42746229 Glycine max
Glyma.07G249400 5.0kb downstream 5.0kb downstream 6834 true Chr07: 42746230-42753063 Glycine max
Glyma.07G249400 5.0kb downstream 5.0kb downstream 5000 false Chr07: 42748064-42753063 Glycine max
Glyma.07G249400 10.0kb upstream 10.0kb upstream 11834 true Chr07: 42736230-42748063 Glycine max
Glyma.07G249400 10.0kb upstream 10.0kb upstream 10000 false Chr07: 42736230-42746229 Glycine max
Glyma.07G249400 10.0kb downstream 10.0kb downstream 11834 true Chr07: 42746230-42758063 Glycine max
Glyma.07G249400 10.0kb downstream 10.0kb downstream 10000 false Chr07: 42748064-42758063 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303163 5265 Fabidae View MSA
124072779 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.810151 0.0 2.89135   High
cufflinks 0.479834 0.0 1.76873    
cufflinks 0.313796 0.0 1.17859    
cufflinks 0.574983 0.0 2.09825    
cufflinks 0.298314 0.0 1.12564    
cufflinks 0.208879 0.0 0.80017 Low Low
cufflinks 1.3079 0.0 4.47565   High
cufflinks 0.218955 0.0 0.836457 Low Low
cufflinks 0.465238 0.0 1.71658    
cufflinks 0.193        
cufflinks 0.152       Low
cufflinks 0.586       High
cufflinks 0.413        
cufflinks 0.511       High
cufflinks 0.267        
cufflinks 0.309        
cufflinks 0.384        
cufflinks 0.411        
cufflinks 0.596       High
cufflinks 0.221        
cufflinks 0.151       Low
cufflinks 0.22        
cufflinks 0.362        
cufflinks 0.115       Low
cufflinks 0.34        
cufflinks 0.19        

0 Strain