Gene : Glyma.08G016200 G. max Wm82.a2.v1
Defline:  (1 of 26) PF01388 - ARID/BRIGHT DNA binding domain (ARID) Genomic Order:  162
Name:  ? Glyma.08G016200 Secondary Identifier:  ? PAC:30537284
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G016200 0.5kb upstream 0.5kb upstream 7504 true Chr08: 1278226-1285729 Glycine max
Glyma.08G016200 0.5kb upstream 0.5kb upstream 500 false Chr08: 1285230-1285729 Glycine max
Glyma.08G016200 0.5kb downstream 0.5kb downstream 7504 true Chr08: 1277726-1285229 Glycine max
Glyma.08G016200 0.5kb downstream 0.5kb downstream 500 false Chr08: 1277726-1278225 Glycine max
Glyma.08G016200 1.0kb upstream 1.0kb upstream 8004 true Chr08: 1278226-1286229 Glycine max
Glyma.08G016200 1.0kb upstream 1.0kb upstream 1000 false Chr08: 1285230-1286229 Glycine max
Glyma.08G016200 1.0kb downstream 1.0kb downstream 8004 true Chr08: 1277226-1285229 Glycine max
Glyma.08G016200 1.0kb downstream 1.0kb downstream 1000 false Chr08: 1277226-1278225 Glycine max
Glyma.08G016200 2.0kb upstream 2.0kb upstream 9004 true Chr08: 1278226-1287229 Glycine max
Glyma.08G016200 2.0kb upstream 2.0kb upstream 2000 false Chr08: 1285230-1287229 Glycine max
Glyma.08G016200 2.0kb downstream 2.0kb downstream 9004 true Chr08: 1276226-1285229 Glycine max
Glyma.08G016200 2.0kb downstream 2.0kb downstream 2000 false Chr08: 1276226-1278225 Glycine max
Glyma.08G016200 5.0kb upstream 5.0kb upstream 12004 true Chr08: 1278226-1290229 Glycine max
Glyma.08G016200 5.0kb upstream 5.0kb upstream 5000 false Chr08: 1285230-1290229 Glycine max
Glyma.08G016200 5.0kb downstream 5.0kb downstream 12004 true Chr08: 1273226-1285229 Glycine max
Glyma.08G016200 5.0kb downstream 5.0kb downstream 5000 false Chr08: 1273226-1278225 Glycine max
Glyma.08G016200 10.0kb upstream 10.0kb upstream 17004 true Chr08: 1278226-1295229 Glycine max
Glyma.08G016200 10.0kb upstream 10.0kb upstream 10000 false Chr08: 1285230-1295229 Glycine max
Glyma.08G016200 10.0kb downstream 10.0kb downstream 17004 true Chr08: 1268226-1285229 Glycine max
Glyma.08G016200 10.0kb downstream 10.0kb downstream 10000 false Chr08: 1268226-1278225 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301307 5265 Fabidae View MSA
124068445 5270 Rosid View MSA
123753441 5271 Pentapetalae View MSA
122795804 5272 Eudicot View MSA
122049441 5273 Angiosperm View MSA
121348389 5274 Embryophyte View MSA
123380842 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.882384 0.0 3.00652   Low
cufflinks 2.34614 0.0 6.98983    
cufflinks 0.901351 0.0 3.05279   Low
cufflinks 1.99552 0.0 6.07442    
cufflinks 1.71601 0.0 5.35985    
cufflinks 1.76017 0.0 5.46219    
cufflinks 4.04909 0.0 11.3329   High
cufflinks 1.36203 0.0 4.37692    
cufflinks 2.36406 0.0 7.03614    
cufflinks 0.534        
cufflinks 0.214       Low
cufflinks 1.028       High
cufflinks 0.926        
cufflinks 1.098       High
cufflinks 0.451        
cufflinks 0.727        
cufflinks 0.229       Low
cufflinks 1.095       High
cufflinks 0.93        
cufflinks 0.566        
cufflinks 0.202       Low
cufflinks 0.518        
cufflinks 0.609        
cufflinks 0.21       Low
cufflinks 0.516        
cufflinks 0.27       Low

0 Strain