Gene : Glyma.08G018000 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR11751:SF380 - 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 2-RELATED Genomic Order:  180
Name:  ? Glyma.08G018000 Secondary Identifier:  ? PAC:30540924
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax ETHYL-PWY Glycine max pathologic  
Gmax PWY-7270 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G018000 0.5kb upstream 0.5kb upstream 3464 true Chr08: 1450278-1453741 Glycine max
Glyma.08G018000 0.5kb upstream 0.5kb upstream 500 false Chr08: 1453242-1453741 Glycine max
Glyma.08G018000 0.5kb downstream 0.5kb downstream 3464 true Chr08: 1449778-1453241 Glycine max
Glyma.08G018000 0.5kb downstream 0.5kb downstream 500 false Chr08: 1449778-1450277 Glycine max
Glyma.08G018000 1.0kb upstream 1.0kb upstream 3964 true Chr08: 1450278-1454241 Glycine max
Glyma.08G018000 1.0kb upstream 1.0kb upstream 1000 false Chr08: 1453242-1454241 Glycine max
Glyma.08G018000 1.0kb downstream 1.0kb downstream 3964 true Chr08: 1449278-1453241 Glycine max
Glyma.08G018000 1.0kb downstream 1.0kb downstream 1000 false Chr08: 1449278-1450277 Glycine max
Glyma.08G018000 2.0kb upstream 2.0kb upstream 4964 true Chr08: 1450278-1455241 Glycine max
Glyma.08G018000 2.0kb upstream 2.0kb upstream 2000 false Chr08: 1453242-1455241 Glycine max
Glyma.08G018000 2.0kb downstream 2.0kb downstream 4964 true Chr08: 1448278-1453241 Glycine max
Glyma.08G018000 2.0kb downstream 2.0kb downstream 2000 false Chr08: 1448278-1450277 Glycine max
Glyma.08G018000 5.0kb upstream 5.0kb upstream 7964 true Chr08: 1450278-1458241 Glycine max
Glyma.08G018000 5.0kb upstream 5.0kb upstream 5000 false Chr08: 1453242-1458241 Glycine max
Glyma.08G018000 5.0kb downstream 5.0kb downstream 7964 true Chr08: 1445278-1453241 Glycine max
Glyma.08G018000 5.0kb downstream 5.0kb downstream 5000 false Chr08: 1445278-1450277 Glycine max
Glyma.08G018000 10.0kb upstream 10.0kb upstream 12964 true Chr08: 1450278-1463241 Glycine max
Glyma.08G018000 10.0kb upstream 10.0kb upstream 10000 false Chr08: 1453242-1463241 Glycine max
Glyma.08G018000 10.0kb downstream 10.0kb downstream 12964 true Chr08: 1440278-1453241 Glycine max
Glyma.08G018000 10.0kb downstream 10.0kb downstream 10000 false Chr08: 1440278-1450277 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299768 5265 Fabidae View MSA
124064739 5270 Rosid View MSA
123742797 5271 Pentapetalae View MSA
122787155 5272 Eudicot View MSA
122050094 5273 Angiosperm View MSA
121311735 5274 Embryophyte View MSA
123428176 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.3687 0.0 49.1446   High
cufflinks 3.00563 0.0 9.04764    
cufflinks 13.1677 0.0 35.1372    
cufflinks 9.1727 0.0 24.7134    
cufflinks 4.74264 0.0 13.4874    
cufflinks 12.2028 0.0 32.6048    
cufflinks 1.4812 0.0 4.92795   Low
cufflinks 5.0179 0.0 14.136    
cufflinks 3.67686 0.0 10.7664    
cufflinks 23.229     High  
cufflinks 22.64     High  
cufflinks 28.378     High  
cufflinks 17.959     High  
cufflinks 1.636       Low
cufflinks 3.153       Low
cufflinks 11.687     High  
cufflinks 80.539     High High
cufflinks 23.924     High  
cufflinks 4.845        
cufflinks 6.417        
cufflinks 4.029       Low
cufflinks 9.426     High  
cufflinks 19.335     High  
cufflinks 22.97     High  
cufflinks 7.335     High  
cufflinks 9.146     High  

0 Strain