Gene : Glyma.08G054400 G. max Wm82.a2.v1
Defline:  (1 of 2) PF15072 - Domain of unknown function (DUF4539) (DUF4539) Genomic Order:  544
Name:  ? Glyma.08G054400 Secondary Identifier:  ? PAC:30538315
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G054400 0.5kb upstream 0.5kb upstream 6888 true Chr08: 4197466-4204353 Glycine max
Glyma.08G054400 0.5kb upstream 0.5kb upstream 500 false Chr08: 4203854-4204353 Glycine max
Glyma.08G054400 0.5kb downstream 0.5kb downstream 6888 true Chr08: 4196966-4203853 Glycine max
Glyma.08G054400 0.5kb downstream 0.5kb downstream 500 false Chr08: 4196966-4197465 Glycine max
Glyma.08G054400 1.0kb upstream 1.0kb upstream 7388 true Chr08: 4197466-4204853 Glycine max
Glyma.08G054400 1.0kb upstream 1.0kb upstream 1000 false Chr08: 4203854-4204853 Glycine max
Glyma.08G054400 1.0kb downstream 1.0kb downstream 7388 true Chr08: 4196466-4203853 Glycine max
Glyma.08G054400 1.0kb downstream 1.0kb downstream 1000 false Chr08: 4196466-4197465 Glycine max
Glyma.08G054400 2.0kb upstream 2.0kb upstream 8388 true Chr08: 4197466-4205853 Glycine max
Glyma.08G054400 2.0kb upstream 2.0kb upstream 2000 false Chr08: 4203854-4205853 Glycine max
Glyma.08G054400 2.0kb downstream 2.0kb downstream 8388 true Chr08: 4195466-4203853 Glycine max
Glyma.08G054400 2.0kb downstream 2.0kb downstream 2000 false Chr08: 4195466-4197465 Glycine max
Glyma.08G054400 5.0kb upstream 5.0kb upstream 11388 true Chr08: 4197466-4208853 Glycine max
Glyma.08G054400 5.0kb upstream 5.0kb upstream 5000 false Chr08: 4203854-4208853 Glycine max
Glyma.08G054400 5.0kb downstream 5.0kb downstream 11388 true Chr08: 4192466-4203853 Glycine max
Glyma.08G054400 5.0kb downstream 5.0kb downstream 5000 false Chr08: 4192466-4197465 Glycine max
Glyma.08G054400 10.0kb upstream 10.0kb upstream 16388 true Chr08: 4197466-4213853 Glycine max
Glyma.08G054400 10.0kb upstream 10.0kb upstream 10000 false Chr08: 4203854-4213853 Glycine max
Glyma.08G054400 10.0kb downstream 10.0kb downstream 16388 true Chr08: 4187466-4203853 Glycine max
Glyma.08G054400 10.0kb downstream 10.0kb downstream 10000 false Chr08: 4187466-4197465 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303857 5265 Fabidae View MSA
124061521 5270 Rosid View MSA
123742114 5271 Pentapetalae View MSA
122792818 5272 Eudicot View MSA
122049874 5273 Angiosperm View MSA
121311625 5274 Embryophyte View MSA
123348898 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.24367 0.0 32.7463   High
cufflinks 3.94116 0.0 44.2681    
cufflinks 4.75184 0.0 22.6312    
cufflinks 3.50531 0.0 41.9466    
cufflinks 6.32155 0.0 68.6692   High
cufflinks 3.86471 0.0 44.8306    
cufflinks 3.10436 0.0 38.2992   Low
cufflinks 3.72067 0.0 44.9611    
cufflinks 5.32476 0.0 62.0754    
cufflinks 0.138        
cufflinks 0.064       Low
cufflinks 0.17        
cufflinks 0.362       High
cufflinks 0.424       High
cufflinks 0.101        
cufflinks 0.146        
cufflinks 0.046     Low Low
cufflinks 0.105     Low  
cufflinks 0.493       High
cufflinks 0.072     Low  
cufflinks 0.083        
cufflinks 0.123        
cufflinks 0.23        
cufflinks 0.093        
cufflinks 0.086     Low  
cufflinks 0.107        

0 Strain