Gene : Glyma.08G054700 G. max Wm82.a2.v1
Defline:  (1 of 45) PF03547 - Membrane transport protein (Mem_trans) Genomic Order:  547
Name:  ? Glyma.08G054700 Secondary Identifier:  ? PAC:30538925
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G054700 0.5kb upstream 0.5kb upstream 4394 true Chr08: 4215029-4219422 Glycine max
Glyma.08G054700 0.5kb upstream 0.5kb upstream 500 false Chr08: 4215029-4215528 Glycine max
Glyma.08G054700 0.5kb downstream 0.5kb downstream 4394 true Chr08: 4215529-4219922 Glycine max
Glyma.08G054700 0.5kb downstream 0.5kb downstream 500 false Chr08: 4219423-4219922 Glycine max
Glyma.08G054700 1.0kb upstream 1.0kb upstream 4894 true Chr08: 4214529-4219422 Glycine max
Glyma.08G054700 1.0kb upstream 1.0kb upstream 1000 false Chr08: 4214529-4215528 Glycine max
Glyma.08G054700 1.0kb downstream 1.0kb downstream 4894 true Chr08: 4215529-4220422 Glycine max
Glyma.08G054700 1.0kb downstream 1.0kb downstream 1000 false Chr08: 4219423-4220422 Glycine max
Glyma.08G054700 2.0kb upstream 2.0kb upstream 5894 true Chr08: 4213529-4219422 Glycine max
Glyma.08G054700 2.0kb upstream 2.0kb upstream 2000 false Chr08: 4213529-4215528 Glycine max
Glyma.08G054700 2.0kb downstream 2.0kb downstream 5894 true Chr08: 4215529-4221422 Glycine max
Glyma.08G054700 2.0kb downstream 2.0kb downstream 2000 false Chr08: 4219423-4221422 Glycine max
Glyma.08G054700 5.0kb upstream 5.0kb upstream 8894 true Chr08: 4210529-4219422 Glycine max
Glyma.08G054700 5.0kb upstream 5.0kb upstream 5000 false Chr08: 4210529-4215528 Glycine max
Glyma.08G054700 5.0kb downstream 5.0kb downstream 8894 true Chr08: 4215529-4224422 Glycine max
Glyma.08G054700 5.0kb downstream 5.0kb downstream 5000 false Chr08: 4219423-4224422 Glycine max
Glyma.08G054700 10.0kb upstream 10.0kb upstream 13894 true Chr08: 4205529-4219422 Glycine max
Glyma.08G054700 10.0kb upstream 10.0kb upstream 10000 false Chr08: 4205529-4215528 Glycine max
Glyma.08G054700 10.0kb downstream 10.0kb downstream 13894 true Chr08: 4215529-4229422 Glycine max
Glyma.08G054700 10.0kb downstream 10.0kb downstream 10000 false Chr08: 4219423-4229422 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122255467 5265 Fabidae View MSA
123997171 5270 Rosid View MSA
123747841 5271 Pentapetalae View MSA
122796951 5272 Eudicot View MSA
122046141 5273 Angiosperm View MSA
121351759 5274 Embryophyte View MSA
123382310 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.827231 0.0 2.89635   Low
cufflinks 11.5474 0.0 30.8425   High
cufflinks 1.68669 0.0 5.45283   Low
cufflinks 5.14912 0.0 14.3583    
cufflinks 8.38549 0.0 22.5863    
cufflinks 2.95863 0.0 8.80938    
cufflinks 5.25976 0.0 14.6371    
cufflinks 17.044 0.0 45.6328   High
cufflinks 3.61904 0.0 10.4899    
cufflinks 8.005     High High
cufflinks 0.168       Low
cufflinks 2.409        
cufflinks 6.375        
cufflinks 6.637        
cufflinks 0.035     Low Low
cufflinks 2.091        
cufflinks 1.402        
cufflinks 4.454        
cufflinks 9.641     High High
cufflinks 1.674        
cufflinks 0.392        
cufflinks 2.15        
cufflinks 2.443        
cufflinks 0.279       Low
cufflinks 1.972        
cufflinks 0.788        

0 Strain