Gene : Glyma.08G055400 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR15454 - NISCHARIN RELATED Genomic Order:  554
Name:  ? Glyma.08G055400 Secondary Identifier:  ? PAC:30540372
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G055400 0.5kb upstream 0.5kb upstream 11636 true Chr08: 4254177-4265812 Glycine max
Glyma.08G055400 0.5kb upstream 0.5kb upstream 500 false Chr08: 4254177-4254676 Glycine max
Glyma.08G055400 0.5kb downstream 0.5kb downstream 11636 true Chr08: 4254677-4266312 Glycine max
Glyma.08G055400 0.5kb downstream 0.5kb downstream 500 false Chr08: 4265813-4266312 Glycine max
Glyma.08G055400 1.0kb upstream 1.0kb upstream 12136 true Chr08: 4253677-4265812 Glycine max
Glyma.08G055400 1.0kb upstream 1.0kb upstream 1000 false Chr08: 4253677-4254676 Glycine max
Glyma.08G055400 1.0kb downstream 1.0kb downstream 12136 true Chr08: 4254677-4266812 Glycine max
Glyma.08G055400 1.0kb downstream 1.0kb downstream 1000 false Chr08: 4265813-4266812 Glycine max
Glyma.08G055400 2.0kb upstream 2.0kb upstream 13136 true Chr08: 4252677-4265812 Glycine max
Glyma.08G055400 2.0kb upstream 2.0kb upstream 2000 false Chr08: 4252677-4254676 Glycine max
Glyma.08G055400 2.0kb downstream 2.0kb downstream 13136 true Chr08: 4254677-4267812 Glycine max
Glyma.08G055400 2.0kb downstream 2.0kb downstream 2000 false Chr08: 4265813-4267812 Glycine max
Glyma.08G055400 5.0kb upstream 5.0kb upstream 16136 true Chr08: 4249677-4265812 Glycine max
Glyma.08G055400 5.0kb upstream 5.0kb upstream 5000 false Chr08: 4249677-4254676 Glycine max
Glyma.08G055400 5.0kb downstream 5.0kb downstream 16136 true Chr08: 4254677-4270812 Glycine max
Glyma.08G055400 5.0kb downstream 5.0kb downstream 5000 false Chr08: 4265813-4270812 Glycine max
Glyma.08G055400 10.0kb upstream 10.0kb upstream 21136 true Chr08: 4244677-4265812 Glycine max
Glyma.08G055400 10.0kb upstream 10.0kb upstream 10000 false Chr08: 4244677-4254676 Glycine max
Glyma.08G055400 10.0kb downstream 10.0kb downstream 21136 true Chr08: 4254677-4275812 Glycine max
Glyma.08G055400 10.0kb downstream 10.0kb downstream 10000 false Chr08: 4265813-4275812 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304834 5265 Fabidae View MSA
124068979 5270 Rosid View MSA
123746713 5271 Pentapetalae View MSA
122789922 5272 Eudicot View MSA
122043032 5273 Angiosperm View MSA
121348804 5274 Embryophyte View MSA
123427587 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.39002 0.0 21.412    
cufflinks 2.22743 0.0 10.299   Low
cufflinks 5.91056 0.0 24.1082    
cufflinks 4.81493 0.0 19.4411    
cufflinks 5.11796 0.0 20.0804    
cufflinks 4.59196 0.0 17.8625    
cufflinks 6.36458 0.0 25.4621    
cufflinks 6.21861 0.0 27.1493    
cufflinks 5.7725 0.0 22.4918    
cufflinks 0.468        
cufflinks 0.356        
cufflinks 0.523        
cufflinks 0.424        
cufflinks 0.401        
cufflinks 0.879       High
cufflinks 0.442        
cufflinks 0.461        
cufflinks 0.608       High
cufflinks 0.32       Low
cufflinks 0.483        
cufflinks 0.384        
cufflinks 0.468        
cufflinks 0.32       Low
cufflinks 0.358        
cufflinks 0.435        
cufflinks 0.349        

0 Strain