Gene : Glyma.08G040400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR17224//PTHR17224:SF5 - PEPTIDYL-TRNA HYDROLASE Genomic Order:  404
Name:  ? Glyma.08G040400 Secondary Identifier:  ? PAC:30536759
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G040400 0.5kb upstream 0.5kb upstream 3063 true Chr08: 3179537-3182599 Glycine max
Glyma.08G040400 0.5kb upstream 0.5kb upstream 500 false Chr08: 3182100-3182599 Glycine max
Glyma.08G040400 0.5kb downstream 0.5kb downstream 3063 true Chr08: 3179037-3182099 Glycine max
Glyma.08G040400 0.5kb downstream 0.5kb downstream 500 false Chr08: 3179037-3179536 Glycine max
Glyma.08G040400 1.0kb upstream 1.0kb upstream 3563 true Chr08: 3179537-3183099 Glycine max
Glyma.08G040400 1.0kb upstream 1.0kb upstream 1000 false Chr08: 3182100-3183099 Glycine max
Glyma.08G040400 1.0kb downstream 1.0kb downstream 3563 true Chr08: 3178537-3182099 Glycine max
Glyma.08G040400 1.0kb downstream 1.0kb downstream 1000 false Chr08: 3178537-3179536 Glycine max
Glyma.08G040400 2.0kb upstream 2.0kb upstream 4563 true Chr08: 3179537-3184099 Glycine max
Glyma.08G040400 2.0kb upstream 2.0kb upstream 2000 false Chr08: 3182100-3184099 Glycine max
Glyma.08G040400 2.0kb downstream 2.0kb downstream 4563 true Chr08: 3177537-3182099 Glycine max
Glyma.08G040400 2.0kb downstream 2.0kb downstream 2000 false Chr08: 3177537-3179536 Glycine max
Glyma.08G040400 5.0kb upstream 5.0kb upstream 7563 true Chr08: 3179537-3187099 Glycine max
Glyma.08G040400 5.0kb upstream 5.0kb upstream 5000 false Chr08: 3182100-3187099 Glycine max
Glyma.08G040400 5.0kb downstream 5.0kb downstream 7563 true Chr08: 3174537-3182099 Glycine max
Glyma.08G040400 5.0kb downstream 5.0kb downstream 5000 false Chr08: 3174537-3179536 Glycine max
Glyma.08G040400 10.0kb upstream 10.0kb upstream 12563 true Chr08: 3179537-3192099 Glycine max
Glyma.08G040400 10.0kb upstream 10.0kb upstream 10000 false Chr08: 3182100-3192099 Glycine max
Glyma.08G040400 10.0kb downstream 10.0kb downstream 12563 true Chr08: 3169537-3182099 Glycine max
Glyma.08G040400 10.0kb downstream 10.0kb downstream 10000 false Chr08: 3169537-3179536 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301647 5265 Fabidae View MSA
124063033 5270 Rosid View MSA
123738074 5271 Pentapetalae View MSA
122785873 5272 Eudicot View MSA
122049044 5273 Angiosperm View MSA
121347021 5274 Embryophyte View MSA
123426354 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.10676 0.0 4.17122   High
cufflinks 0.432183 0.0 1.69438    
cufflinks 0.964456 0.0 3.65346   High
cufflinks 0.218651 0.0 0.878688   Low
cufflinks 0.236368 0.0 0.946638   Low
cufflinks 0.298709 0.0 1.18633    
cufflinks 0.597196 0.0 2.31063    
cufflinks 0.552758 0.0 2.145    
cufflinks 0.442275 0.0 1.73213    
cufflinks 0.543       Low
cufflinks 3.341       High
cufflinks 1.653        
cufflinks 0.525       Low
cufflinks 0.581       Low
cufflinks 1.84        
cufflinks 2.355        
cufflinks 0.918        
cufflinks 1.458        
cufflinks 1.289        
cufflinks 3.537       High
cufflinks 1.226        
cufflinks 3.565       High
cufflinks 2.687        
cufflinks 2.18        
cufflinks 2.919        
cufflinks 1.901        

0 Strain