Gene : Glyma.08G042900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23153:SF39 - CDC48-INTERACTING UBX-DOMAIN PROTEIN Genomic Order:  429
Name:  ? Glyma.08G042900 Secondary Identifier:  ? PAC:30540821
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G042900 0.5kb upstream 0.5kb upstream 4763 true Chr08: 3384074-3388836 Glycine max
Glyma.08G042900 0.5kb upstream 0.5kb upstream 500 false Chr08: 3384074-3384573 Glycine max
Glyma.08G042900 0.5kb downstream 0.5kb downstream 4763 true Chr08: 3384574-3389336 Glycine max
Glyma.08G042900 0.5kb downstream 0.5kb downstream 500 false Chr08: 3388837-3389336 Glycine max
Glyma.08G042900 1.0kb upstream 1.0kb upstream 5263 true Chr08: 3383574-3388836 Glycine max
Glyma.08G042900 1.0kb upstream 1.0kb upstream 1000 false Chr08: 3383574-3384573 Glycine max
Glyma.08G042900 1.0kb downstream 1.0kb downstream 5263 true Chr08: 3384574-3389836 Glycine max
Glyma.08G042900 1.0kb downstream 1.0kb downstream 1000 false Chr08: 3388837-3389836 Glycine max
Glyma.08G042900 2.0kb upstream 2.0kb upstream 6263 true Chr08: 3382574-3388836 Glycine max
Glyma.08G042900 2.0kb upstream 2.0kb upstream 2000 false Chr08: 3382574-3384573 Glycine max
Glyma.08G042900 2.0kb downstream 2.0kb downstream 6263 true Chr08: 3384574-3390836 Glycine max
Glyma.08G042900 2.0kb downstream 2.0kb downstream 2000 false Chr08: 3388837-3390836 Glycine max
Glyma.08G042900 5.0kb upstream 5.0kb upstream 9263 true Chr08: 3379574-3388836 Glycine max
Glyma.08G042900 5.0kb upstream 5.0kb upstream 5000 false Chr08: 3379574-3384573 Glycine max
Glyma.08G042900 5.0kb downstream 5.0kb downstream 9263 true Chr08: 3384574-3393836 Glycine max
Glyma.08G042900 5.0kb downstream 5.0kb downstream 5000 false Chr08: 3388837-3393836 Glycine max
Glyma.08G042900 10.0kb upstream 10.0kb upstream 14263 true Chr08: 3374574-3388836 Glycine max
Glyma.08G042900 10.0kb upstream 10.0kb upstream 10000 false Chr08: 3374574-3384573 Glycine max
Glyma.08G042900 10.0kb downstream 10.0kb downstream 14263 true Chr08: 3384574-3398836 Glycine max
Glyma.08G042900 10.0kb downstream 10.0kb downstream 10000 false Chr08: 3388837-3398836 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308497 5265 Fabidae View MSA
124062974 5270 Rosid View MSA
123738229 5271 Pentapetalae View MSA
122787429 5272 Eudicot View MSA
122047714 5273 Angiosperm View MSA
121346643 5274 Embryophyte View MSA
123428120 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.4499 0.0 28.0614    
cufflinks 5.75691 0.0 16.0611   Low
cufflinks 9.95306 0.0 26.7282    
cufflinks 7.35113 0.0 20.086    
cufflinks 9.12343 0.0 24.6392    
cufflinks 20.4847 0.0 54.957   High
cufflinks 7.39481 0.0 20.2475    
cufflinks 6.9171 0.0 18.9805    
cufflinks 9.94829 0.0 26.7414    
cufflinks 5.915        
cufflinks 13.622     High High
cufflinks 7.272     High  
cufflinks 8.792     High  
cufflinks 5.306       Low
cufflinks 5.827     High  
cufflinks 8.052     High  
cufflinks 8.246     High  
cufflinks 5.814        
cufflinks 4.825       Low
cufflinks 6.135        
cufflinks 13.554     High High
cufflinks 7.069        
cufflinks 6.012        
cufflinks 16.392     High High
cufflinks 5.92        
cufflinks 13.249     High High

0 Strain