Gene : Glyma.08G088100 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR14155:SF74 - RING-H2 FINGER PROTEIN ATL45-RELATED Genomic Order:  881
Name:  ? Glyma.08G088100 Secondary Identifier:  ? PAC:30537939
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G088100 0.5kb upstream 0.5kb upstream 1401 true Chr08: 6673970-6675370 Glycine max
Glyma.08G088100 0.5kb upstream 0.5kb upstream 500 false Chr08: 6674871-6675370 Glycine max
Glyma.08G088100 0.5kb downstream 0.5kb downstream 1401 true Chr08: 6673470-6674870 Glycine max
Glyma.08G088100 0.5kb downstream 0.5kb downstream 500 false Chr08: 6673470-6673969 Glycine max
Glyma.08G088100 1.0kb upstream 1.0kb upstream 1901 true Chr08: 6673970-6675870 Glycine max
Glyma.08G088100 1.0kb upstream 1.0kb upstream 1000 false Chr08: 6674871-6675870 Glycine max
Glyma.08G088100 1.0kb downstream 1.0kb downstream 1901 true Chr08: 6672970-6674870 Glycine max
Glyma.08G088100 1.0kb downstream 1.0kb downstream 1000 false Chr08: 6672970-6673969 Glycine max
Glyma.08G088100 2.0kb upstream 2.0kb upstream 2901 true Chr08: 6673970-6676870 Glycine max
Glyma.08G088100 2.0kb upstream 2.0kb upstream 2000 false Chr08: 6674871-6676870 Glycine max
Glyma.08G088100 2.0kb downstream 2.0kb downstream 2901 true Chr08: 6671970-6674870 Glycine max
Glyma.08G088100 2.0kb downstream 2.0kb downstream 2000 false Chr08: 6671970-6673969 Glycine max
Glyma.08G088100 5.0kb upstream 5.0kb upstream 5901 true Chr08: 6673970-6679870 Glycine max
Glyma.08G088100 5.0kb upstream 5.0kb upstream 5000 false Chr08: 6674871-6679870 Glycine max
Glyma.08G088100 5.0kb downstream 5.0kb downstream 5901 true Chr08: 6668970-6674870 Glycine max
Glyma.08G088100 5.0kb downstream 5.0kb downstream 5000 false Chr08: 6668970-6673969 Glycine max
Glyma.08G088100 10.0kb upstream 10.0kb upstream 10901 true Chr08: 6673970-6684870 Glycine max
Glyma.08G088100 10.0kb upstream 10.0kb upstream 10000 false Chr08: 6674871-6684870 Glycine max
Glyma.08G088100 10.0kb downstream 10.0kb downstream 10901 true Chr08: 6663970-6674870 Glycine max
Glyma.08G088100 10.0kb downstream 10.0kb downstream 10000 false Chr08: 6663970-6673969 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310317 5265 Fabidae View MSA
124050654 5270 Rosid View MSA
123619849 5271 Pentapetalae View MSA
122654281 5272 Eudicot View MSA
122051603 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121351603 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.584941 0.0 2.25275    
cufflinks 0.846247 0.0 3.20567    
cufflinks 2.7293 0.0 9.7055   High
cufflinks 0.677068 0.0 2.59348    
cufflinks 0.267015 0.0 1.06045 Low Low
cufflinks 0.348765 0.0 1.37252   Low
cufflinks 0.758349 0.0 2.88506    
cufflinks 1.14427 0.0 4.27319    
cufflinks 0.311        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.887       High
cufflinks 0.357        
cufflinks 0.047     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.275        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.095       High
cufflinks 0.448        
cufflinks 0.747        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.273        
cufflinks 0.228        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.403        
cufflinks 0.016     Low Low

0 Strain