Gene : Glyma.08G090400 G. max Wm82.a2.v1
Defline:  (1 of 65) PF07719 - Tetratricopeptide repeat (TPR_2) Genomic Order:  904
Name:  ? Glyma.08G090400 Secondary Identifier:  ? PAC:30537819
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G090400 0.5kb upstream 0.5kb upstream 2107 true Chr08: 6808053-6810159 Glycine max
Glyma.08G090400 0.5kb upstream 0.5kb upstream 500 false Chr08: 6809660-6810159 Glycine max
Glyma.08G090400 0.5kb downstream 0.5kb downstream 2107 true Chr08: 6807553-6809659 Glycine max
Glyma.08G090400 0.5kb downstream 0.5kb downstream 500 false Chr08: 6807553-6808052 Glycine max
Glyma.08G090400 1.0kb upstream 1.0kb upstream 2607 true Chr08: 6808053-6810659 Glycine max
Glyma.08G090400 1.0kb upstream 1.0kb upstream 1000 false Chr08: 6809660-6810659 Glycine max
Glyma.08G090400 1.0kb downstream 1.0kb downstream 2607 true Chr08: 6807053-6809659 Glycine max
Glyma.08G090400 1.0kb downstream 1.0kb downstream 1000 false Chr08: 6807053-6808052 Glycine max
Glyma.08G090400 2.0kb upstream 2.0kb upstream 3607 true Chr08: 6808053-6811659 Glycine max
Glyma.08G090400 2.0kb upstream 2.0kb upstream 2000 false Chr08: 6809660-6811659 Glycine max
Glyma.08G090400 2.0kb downstream 2.0kb downstream 3607 true Chr08: 6806053-6809659 Glycine max
Glyma.08G090400 2.0kb downstream 2.0kb downstream 2000 false Chr08: 6806053-6808052 Glycine max
Glyma.08G090400 5.0kb upstream 5.0kb upstream 6607 true Chr08: 6808053-6814659 Glycine max
Glyma.08G090400 5.0kb upstream 5.0kb upstream 5000 false Chr08: 6809660-6814659 Glycine max
Glyma.08G090400 5.0kb downstream 5.0kb downstream 6607 true Chr08: 6803053-6809659 Glycine max
Glyma.08G090400 5.0kb downstream 5.0kb downstream 5000 false Chr08: 6803053-6808052 Glycine max
Glyma.08G090400 10.0kb upstream 10.0kb upstream 11607 true Chr08: 6808053-6819659 Glycine max
Glyma.08G090400 10.0kb upstream 10.0kb upstream 10000 false Chr08: 6809660-6819659 Glycine max
Glyma.08G090400 10.0kb downstream 10.0kb downstream 11607 true Chr08: 6798053-6809659 Glycine max
Glyma.08G090400 10.0kb downstream 10.0kb downstream 10000 false Chr08: 6798053-6808052 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308255 5265 Fabidae View MSA
124064728 5270 Rosid View MSA
123741274 5271 Pentapetalae View MSA
122788681 5272 Eudicot View MSA
122050724 5273 Angiosperm View MSA
121348352 5274 Embryophyte View MSA
123426406 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.0186 0.0 37.7789   High
cufflinks 5.88855 0.0 17.1896   Low
cufflinks 5.70327 0.0 16.8264   Low
cufflinks 9.64423 0.0 26.6767    
cufflinks 13.6743 0.0 36.8148   High
cufflinks 8.27765 0.0 23.1308    
cufflinks 6.22499 0.0 17.9545    
cufflinks 6.80239 0.0 19.5184    
cufflinks 10.3852 0.0 28.4852    
cufflinks 3.751        
cufflinks 0.842       Low
cufflinks 3.357        
cufflinks 7.584     High High
cufflinks 6.903     High High
cufflinks 1.69        
cufflinks 2.944        
cufflinks 6.215     High High
cufflinks 3.304        
cufflinks 5.504        
cufflinks 2.515        
cufflinks 0.865       Low
cufflinks 3.095        
cufflinks 7.845     High High
cufflinks 1.682        
cufflinks 2.464        
cufflinks 1.999        

0 Strain