Gene : Glyma.08G090500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13861 - VACUOLAR ATP SYNTHASE SUBUNIT F Genomic Order:  905
Name:  ? Glyma.08G090500 Secondary Identifier:  ? PAC:30536381
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-6126 Glycine max pathologic  
Gmax PWY-7219 Glycine max pathologic  
Gmax PWY-7229 Glycine max pathologic  
Gmax PWY-841 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G090500 0.5kb upstream 0.5kb upstream 4567 true Chr08: 6810421-6814987 Glycine max
Glyma.08G090500 0.5kb upstream 0.5kb upstream 500 false Chr08: 6810421-6810920 Glycine max
Glyma.08G090500 0.5kb downstream 0.5kb downstream 4567 true Chr08: 6810921-6815487 Glycine max
Glyma.08G090500 0.5kb downstream 0.5kb downstream 500 false Chr08: 6814988-6815487 Glycine max
Glyma.08G090500 1.0kb upstream 1.0kb upstream 5067 true Chr08: 6809921-6814987 Glycine max
Glyma.08G090500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 6809921-6810920 Glycine max
Glyma.08G090500 1.0kb downstream 1.0kb downstream 5067 true Chr08: 6810921-6815987 Glycine max
Glyma.08G090500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 6814988-6815987 Glycine max
Glyma.08G090500 2.0kb upstream 2.0kb upstream 6067 true Chr08: 6808921-6814987 Glycine max
Glyma.08G090500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 6808921-6810920 Glycine max
Glyma.08G090500 2.0kb downstream 2.0kb downstream 6067 true Chr08: 6810921-6816987 Glycine max
Glyma.08G090500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 6814988-6816987 Glycine max
Glyma.08G090500 5.0kb upstream 5.0kb upstream 9067 true Chr08: 6805921-6814987 Glycine max
Glyma.08G090500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 6805921-6810920 Glycine max
Glyma.08G090500 5.0kb downstream 5.0kb downstream 9067 true Chr08: 6810921-6819987 Glycine max
Glyma.08G090500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 6814988-6819987 Glycine max
Glyma.08G090500 10.0kb upstream 10.0kb upstream 14067 true Chr08: 6800921-6814987 Glycine max
Glyma.08G090500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 6800921-6810920 Glycine max
Glyma.08G090500 10.0kb downstream 10.0kb downstream 14067 true Chr08: 6810921-6824987 Glycine max
Glyma.08G090500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 6814988-6824987 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309846 5265 Fabidae View MSA
124062785 5270 Rosid View MSA
123736748 5271 Pentapetalae View MSA
122792211 5272 Eudicot View MSA
122044374 5273 Angiosperm View MSA
121344263 5274 Embryophyte View MSA
123428206 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.0561 0.0 62.5337 High Low
cufflinks 37.913 0.0 101.176 High  
cufflinks 33.2811 0.0 88.9744 High  
cufflinks 43.2198 0.0 115.325 High  
cufflinks 46.8839 0.0 125.21 High  
cufflinks 64.961 0.0 175.284 High High
cufflinks 32.8351 0.0 87.8425 High  
cufflinks 45.1118 0.0 120.419 High  
cufflinks 40.4173 0.0 107.828 High  
cufflinks 8.291     High High
cufflinks 4.55       Low
cufflinks 5.46        
cufflinks 8.421     High High
cufflinks 8.646     High High
cufflinks 4.076       Low
cufflinks 6.057        
cufflinks 3.981       Low
cufflinks 7.769     High High
cufflinks 5.932        
cufflinks 6.068        
cufflinks 5.333        
cufflinks 5.859        
cufflinks 5.469        
cufflinks 6.104     High  
cufflinks 5.575        
cufflinks 5.798        

0 Strain