Gene : Glyma.08G085100 G. max Wm82.a2.v1
Defline:  (1 of 2) PF00575//PF03876 - S1 RNA binding domain (S1) // SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 (SHS2_Rpb7-N) Genomic Order:  851
Name:  ? Glyma.08G085100 Secondary Identifier:  ? PAC:30535803
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G085100 0.5kb upstream 0.5kb upstream 4921 true Chr08: 6402115-6407035 Glycine max
Glyma.08G085100 0.5kb upstream 0.5kb upstream 500 false Chr08: 6402115-6402614 Glycine max
Glyma.08G085100 0.5kb downstream 0.5kb downstream 4921 true Chr08: 6402615-6407535 Glycine max
Glyma.08G085100 0.5kb downstream 0.5kb downstream 500 false Chr08: 6407036-6407535 Glycine max
Glyma.08G085100 1.0kb upstream 1.0kb upstream 5421 true Chr08: 6401615-6407035 Glycine max
Glyma.08G085100 1.0kb upstream 1.0kb upstream 1000 false Chr08: 6401615-6402614 Glycine max
Glyma.08G085100 1.0kb downstream 1.0kb downstream 5421 true Chr08: 6402615-6408035 Glycine max
Glyma.08G085100 1.0kb downstream 1.0kb downstream 1000 false Chr08: 6407036-6408035 Glycine max
Glyma.08G085100 2.0kb upstream 2.0kb upstream 6421 true Chr08: 6400615-6407035 Glycine max
Glyma.08G085100 2.0kb upstream 2.0kb upstream 2000 false Chr08: 6400615-6402614 Glycine max
Glyma.08G085100 2.0kb downstream 2.0kb downstream 6421 true Chr08: 6402615-6409035 Glycine max
Glyma.08G085100 2.0kb downstream 2.0kb downstream 2000 false Chr08: 6407036-6409035 Glycine max
Glyma.08G085100 5.0kb upstream 5.0kb upstream 9421 true Chr08: 6397615-6407035 Glycine max
Glyma.08G085100 5.0kb upstream 5.0kb upstream 5000 false Chr08: 6397615-6402614 Glycine max
Glyma.08G085100 5.0kb downstream 5.0kb downstream 9421 true Chr08: 6402615-6412035 Glycine max
Glyma.08G085100 5.0kb downstream 5.0kb downstream 5000 false Chr08: 6407036-6412035 Glycine max
Glyma.08G085100 10.0kb upstream 10.0kb upstream 14421 true Chr08: 6392615-6407035 Glycine max
Glyma.08G085100 10.0kb upstream 10.0kb upstream 10000 false Chr08: 6392615-6402614 Glycine max
Glyma.08G085100 10.0kb downstream 10.0kb downstream 14421 true Chr08: 6402615-6417035 Glycine max
Glyma.08G085100 10.0kb downstream 10.0kb downstream 10000 false Chr08: 6407036-6417035 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303229 5265 Fabidae View MSA
124066331 5270 Rosid View MSA
123736511 5271 Pentapetalae View MSA
122789999 5272 Eudicot View MSA
122045109 5273 Angiosperm View MSA
121343808 5274 Embryophyte View MSA
123424516 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.6255 0.0 115.781 High  
cufflinks 29.5438 0.0 97.6232 High  
cufflinks 30.4999 0.0 100.952 High  
cufflinks 28.8487 0.0 95.3959 High  
cufflinks 27.6167 0.0 91.6762 High  
cufflinks 44.4812 0.0 148.161 High High
cufflinks 27.3738 0.0 90.8905 High  
cufflinks 37.8587 0.0 125.059 High High
cufflinks 23.2036 0.0 77.4483 High Low
cufflinks 2.555        
cufflinks 1.276       Low
cufflinks 2.066        
cufflinks 2.429        
cufflinks 2.71       High
cufflinks 1.02       Low
cufflinks 2.372        
cufflinks 1.603        
cufflinks 2.093        
cufflinks 2.16        
cufflinks 2.174        
cufflinks 1.274       Low
cufflinks 2.336        
cufflinks 2.525        
cufflinks 1.434       Low
cufflinks 2.45        
cufflinks 1.717        

0 Strain