Gene : Glyma.08G078500 G. max Wm82.a2.v1
Defline:  (1 of 25) PF04852 - Protein of unknown function (DUF640) (DUF640) Genomic Order:  785
Name:  ? Glyma.08G078500 Secondary Identifier:  ? PAC:30540066
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G078500 0.5kb upstream 0.5kb upstream 2610 true Chr08: 5980668-5983277 Glycine max
Glyma.08G078500 0.5kb upstream 0.5kb upstream 500 false Chr08: 5980668-5981167 Glycine max
Glyma.08G078500 0.5kb downstream 0.5kb downstream 2610 true Chr08: 5981168-5983777 Glycine max
Glyma.08G078500 0.5kb downstream 0.5kb downstream 500 false Chr08: 5983278-5983777 Glycine max
Glyma.08G078500 1.0kb upstream 1.0kb upstream 3110 true Chr08: 5980168-5983277 Glycine max
Glyma.08G078500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 5980168-5981167 Glycine max
Glyma.08G078500 1.0kb downstream 1.0kb downstream 3110 true Chr08: 5981168-5984277 Glycine max
Glyma.08G078500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 5983278-5984277 Glycine max
Glyma.08G078500 2.0kb upstream 2.0kb upstream 4110 true Chr08: 5979168-5983277 Glycine max
Glyma.08G078500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 5979168-5981167 Glycine max
Glyma.08G078500 2.0kb downstream 2.0kb downstream 4110 true Chr08: 5981168-5985277 Glycine max
Glyma.08G078500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 5983278-5985277 Glycine max
Glyma.08G078500 5.0kb upstream 5.0kb upstream 7110 true Chr08: 5976168-5983277 Glycine max
Glyma.08G078500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 5976168-5981167 Glycine max
Glyma.08G078500 5.0kb downstream 5.0kb downstream 7110 true Chr08: 5981168-5988277 Glycine max
Glyma.08G078500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 5983278-5988277 Glycine max
Glyma.08G078500 10.0kb upstream 10.0kb upstream 12110 true Chr08: 5971168-5983277 Glycine max
Glyma.08G078500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 5971168-5981167 Glycine max
Glyma.08G078500 10.0kb downstream 10.0kb downstream 12110 true Chr08: 5981168-5993277 Glycine max
Glyma.08G078500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 5983278-5993277 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310489 5265 Fabidae View MSA
124071658 5270 Rosid View MSA
123753170 5271 Pentapetalae View MSA
122789282 5272 Eudicot View MSA
122049887 5273 Angiosperm View MSA
121351474 5274 Embryophyte View MSA
123382179 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.81083 0.0 21.6407    
cufflinks 1.12161 0.0 3.94382    
cufflinks 61.2298 0.0 176.057 High High
cufflinks 0.274643 0.0 1.04497   Low
cufflinks 2.69347 0.0 8.50852    
cufflinks 0.140273 0.0 0.549023 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 14.0484 0.0 37.6357    
cufflinks 2.92669 0.0 9.15938    
cufflinks 1.104        
cufflinks 0.209        
cufflinks 17.044     High High
cufflinks 0.549        
cufflinks 0.017     Low Low
cufflinks 0.053       Low
cufflinks 0.326        
cufflinks 1.9       High
cufflinks 0.48        
cufflinks 0.405        
cufflinks 0.085     Low  
cufflinks 0.42        
cufflinks 0.177        
cufflinks 0.262        
cufflinks 0.301        
cufflinks 0.166        
cufflinks 0.385        

0 Strain