Gene : Glyma.08G069800 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR32370:SF6 - ROOT PHOTOTROPISM PROTEIN 3 Genomic Order:  698
Name:  ? Glyma.08G069800 Secondary Identifier:  ? PAC:30536884
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G069800 0.5kb upstream 0.5kb upstream 4307 true Chr08: 5325052-5329358 Glycine max
Glyma.08G069800 0.5kb upstream 0.5kb upstream 500 false Chr08: 5328859-5329358 Glycine max
Glyma.08G069800 0.5kb downstream 0.5kb downstream 4307 true Chr08: 5324552-5328858 Glycine max
Glyma.08G069800 0.5kb downstream 0.5kb downstream 500 false Chr08: 5324552-5325051 Glycine max
Glyma.08G069800 1.0kb upstream 1.0kb upstream 4807 true Chr08: 5325052-5329858 Glycine max
Glyma.08G069800 1.0kb upstream 1.0kb upstream 1000 false Chr08: 5328859-5329858 Glycine max
Glyma.08G069800 1.0kb downstream 1.0kb downstream 4807 true Chr08: 5324052-5328858 Glycine max
Glyma.08G069800 1.0kb downstream 1.0kb downstream 1000 false Chr08: 5324052-5325051 Glycine max
Glyma.08G069800 2.0kb upstream 2.0kb upstream 5807 true Chr08: 5325052-5330858 Glycine max
Glyma.08G069800 2.0kb upstream 2.0kb upstream 2000 false Chr08: 5328859-5330858 Glycine max
Glyma.08G069800 2.0kb downstream 2.0kb downstream 5807 true Chr08: 5323052-5328858 Glycine max
Glyma.08G069800 2.0kb downstream 2.0kb downstream 2000 false Chr08: 5323052-5325051 Glycine max
Glyma.08G069800 5.0kb upstream 5.0kb upstream 8807 true Chr08: 5325052-5333858 Glycine max
Glyma.08G069800 5.0kb upstream 5.0kb upstream 5000 false Chr08: 5328859-5333858 Glycine max
Glyma.08G069800 5.0kb downstream 5.0kb downstream 8807 true Chr08: 5320052-5328858 Glycine max
Glyma.08G069800 5.0kb downstream 5.0kb downstream 5000 false Chr08: 5320052-5325051 Glycine max
Glyma.08G069800 10.0kb upstream 10.0kb upstream 13807 true Chr08: 5325052-5338858 Glycine max
Glyma.08G069800 10.0kb upstream 10.0kb upstream 10000 false Chr08: 5328859-5338858 Glycine max
Glyma.08G069800 10.0kb downstream 10.0kb downstream 13807 true Chr08: 5315052-5328858 Glycine max
Glyma.08G069800 10.0kb downstream 10.0kb downstream 10000 false Chr08: 5315052-5325051 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304495 5265 Fabidae View MSA
124063481 5270 Rosid View MSA
123746549 5271 Pentapetalae View MSA
122794613 5272 Eudicot View MSA
122049761 5273 Angiosperm View MSA
121347435 5274 Embryophyte View MSA
123380549 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.234589 0.0 1.14547   Low
cufflinks 0.710367 0.0 2.99473    
cufflinks 0.511301 0.0 2.93056    
cufflinks 1.336 0.0 5.95048    
cufflinks 4.33086 0.0 16.1289   High
cufflinks 1.16692 0.0 4.33009    
cufflinks 0.656293 0.0 3.60157    
cufflinks 2.44597 0.0 8.99746   High
cufflinks 1.0937 0.0 5.22886    
cufflinks 1.162       High
cufflinks 0.024     Low Low
cufflinks 0.291        
cufflinks 0.61       High
cufflinks 0.44        
cufflinks 0.023     Low Low
cufflinks 0.094     Low  
cufflinks 0.666       High
cufflinks 0.289        
cufflinks 0.361        
cufflinks 0.098        
cufflinks 0.047     Low  
cufflinks 0.09     Low  
cufflinks 0.081     Low  
cufflinks 0.043     Low Low
cufflinks 0.118        
cufflinks 0.141        

0 Strain