Gene : Glyma.08G071500 G. max Wm82.a2.v1
Defline:  (1 of 16) PF00656 - Caspase domain (Peptidase_C14) Genomic Order:  715
Name:  ? Glyma.08G071500 Secondary Identifier:  ? PAC:30537317
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G071500 0.5kb upstream 0.5kb upstream 2840 true Chr08: 5479323-5482162 Glycine max
Glyma.08G071500 0.5kb upstream 0.5kb upstream 500 false Chr08: 5481663-5482162 Glycine max
Glyma.08G071500 0.5kb downstream 0.5kb downstream 2840 true Chr08: 5478823-5481662 Glycine max
Glyma.08G071500 0.5kb downstream 0.5kb downstream 500 false Chr08: 5478823-5479322 Glycine max
Glyma.08G071500 1.0kb upstream 1.0kb upstream 3340 true Chr08: 5479323-5482662 Glycine max
Glyma.08G071500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 5481663-5482662 Glycine max
Glyma.08G071500 1.0kb downstream 1.0kb downstream 3340 true Chr08: 5478323-5481662 Glycine max
Glyma.08G071500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 5478323-5479322 Glycine max
Glyma.08G071500 2.0kb upstream 2.0kb upstream 4340 true Chr08: 5479323-5483662 Glycine max
Glyma.08G071500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 5481663-5483662 Glycine max
Glyma.08G071500 2.0kb downstream 2.0kb downstream 4340 true Chr08: 5477323-5481662 Glycine max
Glyma.08G071500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 5477323-5479322 Glycine max
Glyma.08G071500 5.0kb upstream 5.0kb upstream 7340 true Chr08: 5479323-5486662 Glycine max
Glyma.08G071500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 5481663-5486662 Glycine max
Glyma.08G071500 5.0kb downstream 5.0kb downstream 7340 true Chr08: 5474323-5481662 Glycine max
Glyma.08G071500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 5474323-5479322 Glycine max
Glyma.08G071500 10.0kb upstream 10.0kb upstream 12340 true Chr08: 5479323-5491662 Glycine max
Glyma.08G071500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 5481663-5491662 Glycine max
Glyma.08G071500 10.0kb downstream 10.0kb downstream 12340 true Chr08: 5469323-5481662 Glycine max
Glyma.08G071500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 5469323-5479322 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122030313 5273 Angiosperm View MSA
122240326 5265 Fabidae Singleton cluster - no MSA
123985410 5270 Rosid Singleton cluster - no MSA
123560840 5271 Pentapetalae Singleton cluster - no MSA
122595635 5272 Eudicot Singleton cluster - no MSA
123428899 5275 Viridiplantae View MSA
121350269 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0919565 0.0 0.374613 Low  
cufflinks 0.0221437 0.0 0.100422 Low  
cufflinks 0.0136098 0.0 0.0643915 Low  
cufflinks 0.0124446 0.0 0.0598341 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.297126 0.0 1.1565   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.133       High
cufflinks 0.009     Low  
cufflinks 0.007     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.015     Low  
cufflinks 0.016     Low  
cufflinks 0.028     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low  
cufflinks 0.009     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.02     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.019     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain