Gene : Glyma.08G116000 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR12902 - WASP-1 Genomic Order:  1160
Name:  ? Glyma.08G116000 Secondary Identifier:  ? PAC:30538823
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G116000 0.5kb upstream 0.5kb upstream 9088 true Chr08: 8891285-8900372 Glycine max
Glyma.08G116000 0.5kb upstream 0.5kb upstream 500 false Chr08: 8899873-8900372 Glycine max
Glyma.08G116000 0.5kb downstream 0.5kb downstream 9088 true Chr08: 8890785-8899872 Glycine max
Glyma.08G116000 0.5kb downstream 0.5kb downstream 500 false Chr08: 8890785-8891284 Glycine max
Glyma.08G116000 1.0kb upstream 1.0kb upstream 9588 true Chr08: 8891285-8900872 Glycine max
Glyma.08G116000 1.0kb upstream 1.0kb upstream 1000 false Chr08: 8899873-8900872 Glycine max
Glyma.08G116000 1.0kb downstream 1.0kb downstream 9588 true Chr08: 8890285-8899872 Glycine max
Glyma.08G116000 1.0kb downstream 1.0kb downstream 1000 false Chr08: 8890285-8891284 Glycine max
Glyma.08G116000 2.0kb upstream 2.0kb upstream 10588 true Chr08: 8891285-8901872 Glycine max
Glyma.08G116000 2.0kb upstream 2.0kb upstream 2000 false Chr08: 8899873-8901872 Glycine max
Glyma.08G116000 2.0kb downstream 2.0kb downstream 10588 true Chr08: 8889285-8899872 Glycine max
Glyma.08G116000 2.0kb downstream 2.0kb downstream 2000 false Chr08: 8889285-8891284 Glycine max
Glyma.08G116000 5.0kb upstream 5.0kb upstream 13588 true Chr08: 8891285-8904872 Glycine max
Glyma.08G116000 5.0kb upstream 5.0kb upstream 5000 false Chr08: 8899873-8904872 Glycine max
Glyma.08G116000 5.0kb downstream 5.0kb downstream 13588 true Chr08: 8886285-8899872 Glycine max
Glyma.08G116000 5.0kb downstream 5.0kb downstream 5000 false Chr08: 8886285-8891284 Glycine max
Glyma.08G116000 10.0kb upstream 10.0kb upstream 18588 true Chr08: 8891285-8909872 Glycine max
Glyma.08G116000 10.0kb upstream 10.0kb upstream 10000 false Chr08: 8899873-8909872 Glycine max
Glyma.08G116000 10.0kb downstream 10.0kb downstream 18588 true Chr08: 8881285-8899872 Glycine max
Glyma.08G116000 10.0kb downstream 10.0kb downstream 10000 false Chr08: 8881285-8891284 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313768 5265 Fabidae View MSA
124060592 5270 Rosid View MSA
123744362 5271 Pentapetalae View MSA
122797754 5272 Eudicot View MSA
122043443 5273 Angiosperm View MSA
121351143 5274 Embryophyte View MSA
123382024 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.81642 0.0 13.5153    
cufflinks 6.51754 0.0 22.2873   High
cufflinks 3.92645 0.0 13.8245    
cufflinks 6.03252 0.0 20.6668    
cufflinks 3.56612 0.0 12.8485   Low
cufflinks 5.89499 0.0 20.1367    
cufflinks 7.7663 0.0 26.6219   High
cufflinks 3.88593 0.0 13.666    
cufflinks 4.03843 0.0 14.1901    
cufflinks 1.209        
cufflinks 1.222        
cufflinks 1.812        
cufflinks 2.021        
cufflinks 1.277        
cufflinks 0.903       Low
cufflinks 3.54       High
cufflinks 1.49        
cufflinks 2.373        
cufflinks 2.291        
cufflinks 3.959       High
cufflinks 1.21        
cufflinks 3.534       High
cufflinks 2.153        
cufflinks 1.165       Low
cufflinks 3.447       High
cufflinks 2.168        

0 Strain