Gene : Glyma.08G116900 G. max Wm82.a2.v1
Defline:  (1 of 9) PTHR12411:SF371 - CATHEPSIN O Genomic Order:  1169
Name:  ? Glyma.08G116900 Secondary Identifier:  ? PAC:30536066
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G116900 0.5kb upstream 0.5kb upstream 2956 true Chr08: 9013169-9016124 Glycine max
Glyma.08G116900 0.5kb upstream 0.5kb upstream 500 false Chr08: 9013169-9013668 Glycine max
Glyma.08G116900 0.5kb downstream 0.5kb downstream 2956 true Chr08: 9013669-9016624 Glycine max
Glyma.08G116900 0.5kb downstream 0.5kb downstream 500 false Chr08: 9016125-9016624 Glycine max
Glyma.08G116900 1.0kb upstream 1.0kb upstream 3456 true Chr08: 9012669-9016124 Glycine max
Glyma.08G116900 1.0kb upstream 1.0kb upstream 1000 false Chr08: 9012669-9013668 Glycine max
Glyma.08G116900 1.0kb downstream 1.0kb downstream 3456 true Chr08: 9013669-9017124 Glycine max
Glyma.08G116900 1.0kb downstream 1.0kb downstream 1000 false Chr08: 9016125-9017124 Glycine max
Glyma.08G116900 2.0kb upstream 2.0kb upstream 4456 true Chr08: 9011669-9016124 Glycine max
Glyma.08G116900 2.0kb upstream 2.0kb upstream 2000 false Chr08: 9011669-9013668 Glycine max
Glyma.08G116900 2.0kb downstream 2.0kb downstream 4456 true Chr08: 9013669-9018124 Glycine max
Glyma.08G116900 2.0kb downstream 2.0kb downstream 2000 false Chr08: 9016125-9018124 Glycine max
Glyma.08G116900 5.0kb upstream 5.0kb upstream 7456 true Chr08: 9008669-9016124 Glycine max
Glyma.08G116900 5.0kb upstream 5.0kb upstream 5000 false Chr08: 9008669-9013668 Glycine max
Glyma.08G116900 5.0kb downstream 5.0kb downstream 7456 true Chr08: 9013669-9021124 Glycine max
Glyma.08G116900 5.0kb downstream 5.0kb downstream 5000 false Chr08: 9016125-9021124 Glycine max
Glyma.08G116900 10.0kb upstream 10.0kb upstream 12456 true Chr08: 9003669-9016124 Glycine max
Glyma.08G116900 10.0kb upstream 10.0kb upstream 10000 false Chr08: 9003669-9013668 Glycine max
Glyma.08G116900 10.0kb downstream 10.0kb downstream 12456 true Chr08: 9013669-9026124 Glycine max
Glyma.08G116900 10.0kb downstream 10.0kb downstream 10000 false Chr08: 9016125-9026124 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121780807 5273 Angiosperm View MSA
122296443 5265 Fabidae View MSA
124035647 5270 Rosid View MSA
123747945 5271 Pentapetalae View MSA
122772367 5272 Eudicot View MSA
121052407 5274 Embryophyte View MSA
123092456 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.87097 0.0 6.38073    
cufflinks 7.30626 0.0 20.8054    
cufflinks 1.32259 0.0 4.64766    
cufflinks 9.60446 0.0 26.5667    
cufflinks 1.76918 0.0 6.07427    
cufflinks 3.08754 0.0 9.87317    
cufflinks 58.37 0.0 163.546 High High
cufflinks 0.0457882 0.0 0.18962 Low Low
cufflinks 5.00597 0.0 14.9492    
cufflinks 0.038     Low Low
cufflinks 1.144        
cufflinks 18.772     High  
cufflinks 0.36       Low
cufflinks 0.071     Low Low
cufflinks 16.939     High  
cufflinks 91.678     High  
cufflinks 1.12        
cufflinks 45.596     High  
cufflinks 53.18     High  
cufflinks 78.463     High  
cufflinks 2.526        
cufflinks 62.476     High  
cufflinks 118.893     High High
cufflinks 3.548        
cufflinks 106.726     High High
cufflinks 4.977        

0 Strain