Gene : Glyma.08G108900 G. max Wm82.a2.v1
Defline:  (1 of 19) 2.1.2.1 - Glycine hydroxymethyltransferase / Threonine aldolase Genomic Order:  1089
Name:  ? Glyma.08G108900 Secondary Identifier:  ? PAC:30535887
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4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax GLYSYN-PWY Glycine max pathologic  
Gmax PWY-2161 Glycine max pathologic  
Gmax PWY-3841 Glycine max pathologic  
Gmax SER-GLYSYN-PWY Glycine max pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G108900 0.5kb upstream 0.5kb upstream 5422 true Chr08: 8357922-8363343 Glycine max
Glyma.08G108900 0.5kb upstream 0.5kb upstream 500 false Chr08: 8357922-8358421 Glycine max
Glyma.08G108900 0.5kb downstream 0.5kb downstream 5422 true Chr08: 8358422-8363843 Glycine max
Glyma.08G108900 0.5kb downstream 0.5kb downstream 500 false Chr08: 8363344-8363843 Glycine max
Glyma.08G108900 1.0kb upstream 1.0kb upstream 5922 true Chr08: 8357422-8363343 Glycine max
Glyma.08G108900 1.0kb upstream 1.0kb upstream 1000 false Chr08: 8357422-8358421 Glycine max
Glyma.08G108900 1.0kb downstream 1.0kb downstream 5922 true Chr08: 8358422-8364343 Glycine max
Glyma.08G108900 1.0kb downstream 1.0kb downstream 1000 false Chr08: 8363344-8364343 Glycine max
Glyma.08G108900 2.0kb upstream 2.0kb upstream 6922 true Chr08: 8356422-8363343 Glycine max
Glyma.08G108900 2.0kb upstream 2.0kb upstream 2000 false Chr08: 8356422-8358421 Glycine max
Glyma.08G108900 2.0kb downstream 2.0kb downstream 6922 true Chr08: 8358422-8365343 Glycine max
Glyma.08G108900 2.0kb downstream 2.0kb downstream 2000 false Chr08: 8363344-8365343 Glycine max
Glyma.08G108900 5.0kb upstream 5.0kb upstream 9922 true Chr08: 8353422-8363343 Glycine max
Glyma.08G108900 5.0kb upstream 5.0kb upstream 5000 false Chr08: 8353422-8358421 Glycine max
Glyma.08G108900 5.0kb downstream 5.0kb downstream 9922 true Chr08: 8358422-8368343 Glycine max
Glyma.08G108900 5.0kb downstream 5.0kb downstream 5000 false Chr08: 8363344-8368343 Glycine max
Glyma.08G108900 10.0kb upstream 10.0kb upstream 14922 true Chr08: 8348422-8363343 Glycine max
Glyma.08G108900 10.0kb upstream 10.0kb upstream 10000 false Chr08: 8348422-8358421 Glycine max
Glyma.08G108900 10.0kb downstream 10.0kb downstream 14922 true Chr08: 8358422-8373343 Glycine max
Glyma.08G108900 10.0kb downstream 10.0kb downstream 10000 false Chr08: 8363344-8373343 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313594 5265 Fabidae View MSA
124067933 5270 Rosid View MSA
123746459 5271 Pentapetalae View MSA
122786293 5272 Eudicot View MSA
122042145 5273 Angiosperm View MSA
121347378 5274 Embryophyte View MSA
123426459 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 66.0552 0.0 250.773 High  
cufflinks 67.1972 0.0 298.462 High  
cufflinks 19.7862 0.0 69.8892   Low
cufflinks 201.479 0.0 1602.34 High High
cufflinks 166.061 0.0 1209.35 High  
cufflinks 118.527 0.0 589.373 High  
cufflinks 36.8233 0.0 143.339 High Low
cufflinks 202.31 0.0 1622.53 High High
cufflinks 64.1418 0.0 323.131 High  
cufflinks 26.031     High High
cufflinks 1.462       Low
cufflinks 4.336        
cufflinks 18.734     High High
cufflinks 22.656     High High
cufflinks 1.558       Low
cufflinks 10.27     High  
cufflinks 5.986        
cufflinks 11.764     High  
cufflinks 12.457     High  
cufflinks 5.435        
cufflinks 2.654       Low
cufflinks 7.788     High  
cufflinks 10.83     High  
cufflinks 2.252       Low
cufflinks 7.112     High  
cufflinks 4.894        

0 Strain