Gene : Glyma.08G112600 G. max Wm82.a2.v1
Defline:  (1 of 50) 1.3.3.8 - Tetrahydroberberine oxidase / THB oxidase Genomic Order:  1126
Name:  ? Glyma.08G112600 Secondary Identifier:  ? PAC:30540236
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G112600 0.5kb upstream 0.5kb upstream 3210 true Chr08: 8660670-8663879 Glycine max
Glyma.08G112600 0.5kb upstream 0.5kb upstream 500 false Chr08: 8663380-8663879 Glycine max
Glyma.08G112600 0.5kb downstream 0.5kb downstream 3210 true Chr08: 8660170-8663379 Glycine max
Glyma.08G112600 0.5kb downstream 0.5kb downstream 500 false Chr08: 8660170-8660669 Glycine max
Glyma.08G112600 1.0kb upstream 1.0kb upstream 3710 true Chr08: 8660670-8664379 Glycine max
Glyma.08G112600 1.0kb upstream 1.0kb upstream 1000 false Chr08: 8663380-8664379 Glycine max
Glyma.08G112600 1.0kb downstream 1.0kb downstream 3710 true Chr08: 8659670-8663379 Glycine max
Glyma.08G112600 1.0kb downstream 1.0kb downstream 1000 false Chr08: 8659670-8660669 Glycine max
Glyma.08G112600 2.0kb upstream 2.0kb upstream 4710 true Chr08: 8660670-8665379 Glycine max
Glyma.08G112600 2.0kb upstream 2.0kb upstream 2000 false Chr08: 8663380-8665379 Glycine max
Glyma.08G112600 2.0kb downstream 2.0kb downstream 4710 true Chr08: 8658670-8663379 Glycine max
Glyma.08G112600 2.0kb downstream 2.0kb downstream 2000 false Chr08: 8658670-8660669 Glycine max
Glyma.08G112600 5.0kb upstream 5.0kb upstream 7710 true Chr08: 8660670-8668379 Glycine max
Glyma.08G112600 5.0kb upstream 5.0kb upstream 5000 false Chr08: 8663380-8668379 Glycine max
Glyma.08G112600 5.0kb downstream 5.0kb downstream 7710 true Chr08: 8655670-8663379 Glycine max
Glyma.08G112600 5.0kb downstream 5.0kb downstream 5000 false Chr08: 8655670-8660669 Glycine max
Glyma.08G112600 10.0kb upstream 10.0kb upstream 12710 true Chr08: 8660670-8673379 Glycine max
Glyma.08G112600 10.0kb upstream 10.0kb upstream 10000 false Chr08: 8663380-8673379 Glycine max
Glyma.08G112600 10.0kb downstream 10.0kb downstream 12710 true Chr08: 8650670-8663379 Glycine max
Glyma.08G112600 10.0kb downstream 10.0kb downstream 10000 false Chr08: 8650670-8660669 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308259 5265 Fabidae View MSA
124073888 5270 Rosid View MSA
123750008 5271 Pentapetalae View MSA
122797707 5272 Eudicot View MSA
122049918 5273 Angiosperm View MSA
121351151 5274 Embryophyte View MSA
123426970 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.60369 0.0 23.2219    
cufflinks 5.72141 0.0 18.0263    
cufflinks 12.7728 0.0 37.9272   High
cufflinks 12.481 0.0 37.0543   High
cufflinks 6.67506 0.0 20.6682    
cufflinks 10.8233 0.0 32.3429    
cufflinks 3.41752 0.0 12.2151   Low
cufflinks 11.5704 0.0 34.3756    
cufflinks 6.81658 0.0 20.9533    
cufflinks 21.827     High High
cufflinks 9.064     High  
cufflinks 15.195     High High
cufflinks 10.135     High  
cufflinks 5.629       Low
cufflinks 6.582     High  
cufflinks 8.07     High  
cufflinks 23.172     High High
cufflinks 15.903     High High
cufflinks 8.707     High  
cufflinks 6.949     High  
cufflinks 5.05       Low
cufflinks 9.146     High  
cufflinks 9.865     High  
cufflinks 9.882     High  
cufflinks 6.343        
cufflinks 9.014     High  

0 Strain