Gene : Glyma.08G104200 G. max Wm82.a2.v1
Defline:  (1 of 9) PF05755 - Rubber elongation factor protein (REF) (REF) Genomic Order:  1042
Name:  ? Glyma.08G104200 Secondary Identifier:  ? PAC:30540346
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G104200 0.5kb upstream 0.5kb upstream 2328 true Chr08: 8004460-8006787 Glycine max
Glyma.08G104200 0.5kb upstream 0.5kb upstream 500 false Chr08: 8004460-8004959 Glycine max
Glyma.08G104200 0.5kb downstream 0.5kb downstream 2328 true Chr08: 8004960-8007287 Glycine max
Glyma.08G104200 0.5kb downstream 0.5kb downstream 500 false Chr08: 8006788-8007287 Glycine max
Glyma.08G104200 1.0kb upstream 1.0kb upstream 2828 true Chr08: 8003960-8006787 Glycine max
Glyma.08G104200 1.0kb upstream 1.0kb upstream 1000 false Chr08: 8003960-8004959 Glycine max
Glyma.08G104200 1.0kb downstream 1.0kb downstream 2828 true Chr08: 8004960-8007787 Glycine max
Glyma.08G104200 1.0kb downstream 1.0kb downstream 1000 false Chr08: 8006788-8007787 Glycine max
Glyma.08G104200 2.0kb upstream 2.0kb upstream 3828 true Chr08: 8002960-8006787 Glycine max
Glyma.08G104200 2.0kb upstream 2.0kb upstream 2000 false Chr08: 8002960-8004959 Glycine max
Glyma.08G104200 2.0kb downstream 2.0kb downstream 3828 true Chr08: 8004960-8008787 Glycine max
Glyma.08G104200 2.0kb downstream 2.0kb downstream 2000 false Chr08: 8006788-8008787 Glycine max
Glyma.08G104200 5.0kb upstream 5.0kb upstream 6828 true Chr08: 7999960-8006787 Glycine max
Glyma.08G104200 5.0kb upstream 5.0kb upstream 5000 false Chr08: 7999960-8004959 Glycine max
Glyma.08G104200 5.0kb downstream 5.0kb downstream 6828 true Chr08: 8004960-8011787 Glycine max
Glyma.08G104200 5.0kb downstream 5.0kb downstream 5000 false Chr08: 8006788-8011787 Glycine max
Glyma.08G104200 10.0kb upstream 10.0kb upstream 11828 true Chr08: 7994960-8006787 Glycine max
Glyma.08G104200 10.0kb upstream 10.0kb upstream 10000 false Chr08: 7994960-8004959 Glycine max
Glyma.08G104200 10.0kb downstream 10.0kb downstream 11828 true Chr08: 8004960-8016787 Glycine max
Glyma.08G104200 10.0kb downstream 10.0kb downstream 10000 false Chr08: 8006788-8016787 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311567 5265 Fabidae View MSA
124068365 5270 Rosid View MSA
123736547 5271 Pentapetalae View MSA
122769867 5272 Eudicot View MSA
122050006 5273 Angiosperm View MSA
121311681 5274 Embryophyte View MSA
123348946 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.9409 0.0 74.7802    
cufflinks 83.1055 0.0 285.946 High  
cufflinks 19.997 0.0 70.8933    
cufflinks 44.2867 0.0 159.068 High  
cufflinks 41.3643 0.0 145.304 High  
cufflinks 35.0465 0.0 122.253 High  
cufflinks 265.95 0.0 1510.97 High High
cufflinks 30.8925 0.0 109.116 High  
cufflinks 20.1417 0.0 71.7989 High  
cufflinks 12.162     High  
cufflinks 0.943       Low
cufflinks 8.304     High  
cufflinks 15.769     High  
cufflinks 24.69     High  
cufflinks 0.313       Low
cufflinks 18.053     High  
cufflinks 2.931        
cufflinks 19.356     High  
cufflinks 23.357     High  
cufflinks 17.221     High  
cufflinks 2.294        
cufflinks 18.907     High  
cufflinks 18.511     High  
cufflinks 1.281       Low
cufflinks 18.669     High  
cufflinks 3.099        

0 Strain