Gene : Glyma.08G093400 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR12001:SF41 - HETERODIMERIC GERANYLGERANYL PYROPHOSPHATE SYNTHASE SMALL SUBUNIT, CHLOROPLASTIC Genomic Order:  934
Name:  ? Glyma.08G093400 Secondary Identifier:  ? PAC:30537467
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5120 Glycine max pathologic  
Gmax PWY-5910 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G093400 0.5kb upstream 0.5kb upstream 2950 true Chr08: 7084253-7087202 Glycine max
Glyma.08G093400 0.5kb upstream 0.5kb upstream 500 false Chr08: 7084253-7084752 Glycine max
Glyma.08G093400 0.5kb downstream 0.5kb downstream 2950 true Chr08: 7084753-7087702 Glycine max
Glyma.08G093400 0.5kb downstream 0.5kb downstream 500 false Chr08: 7087203-7087702 Glycine max
Glyma.08G093400 1.0kb upstream 1.0kb upstream 3450 true Chr08: 7083753-7087202 Glycine max
Glyma.08G093400 1.0kb upstream 1.0kb upstream 1000 false Chr08: 7083753-7084752 Glycine max
Glyma.08G093400 1.0kb downstream 1.0kb downstream 3450 true Chr08: 7084753-7088202 Glycine max
Glyma.08G093400 1.0kb downstream 1.0kb downstream 1000 false Chr08: 7087203-7088202 Glycine max
Glyma.08G093400 2.0kb upstream 2.0kb upstream 4450 true Chr08: 7082753-7087202 Glycine max
Glyma.08G093400 2.0kb upstream 2.0kb upstream 2000 false Chr08: 7082753-7084752 Glycine max
Glyma.08G093400 2.0kb downstream 2.0kb downstream 4450 true Chr08: 7084753-7089202 Glycine max
Glyma.08G093400 2.0kb downstream 2.0kb downstream 2000 false Chr08: 7087203-7089202 Glycine max
Glyma.08G093400 5.0kb upstream 5.0kb upstream 7450 true Chr08: 7079753-7087202 Glycine max
Glyma.08G093400 5.0kb upstream 5.0kb upstream 5000 false Chr08: 7079753-7084752 Glycine max
Glyma.08G093400 5.0kb downstream 5.0kb downstream 7450 true Chr08: 7084753-7092202 Glycine max
Glyma.08G093400 5.0kb downstream 5.0kb downstream 5000 false Chr08: 7087203-7092202 Glycine max
Glyma.08G093400 10.0kb upstream 10.0kb upstream 12450 true Chr08: 7074753-7087202 Glycine max
Glyma.08G093400 10.0kb upstream 10.0kb upstream 10000 false Chr08: 7074753-7084752 Glycine max
Glyma.08G093400 10.0kb downstream 10.0kb downstream 12450 true Chr08: 7084753-7097202 Glycine max
Glyma.08G093400 10.0kb downstream 10.0kb downstream 10000 false Chr08: 7087203-7097202 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302635 5265 Fabidae View MSA
124050179 5270 Rosid View MSA
123740099 5271 Pentapetalae View MSA
122794742 5272 Eudicot View MSA
122045849 5273 Angiosperm View MSA
121310516 5274 Embryophyte View MSA
123347979 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.2078 0.0 51.2605   High
cufflinks 13.0241 0.0 35.1203    
cufflinks 8.276 0.0 23.0065   Low
cufflinks 13.4675 0.0 36.2606    
cufflinks 13.8062 0.0 37.1311    
cufflinks 12.6469 0.0 34.1458    
cufflinks 9.69539 0.0 26.6096   Low
cufflinks 13.8355 0.0 37.1877    
cufflinks 11.7508 0.0 31.8373    
cufflinks 15.037     High  
cufflinks 2.922       Low
cufflinks 10.047     High  
cufflinks 11.741     High  
cufflinks 10.891     High  
cufflinks 4.134       Low
cufflinks 21.25     High High
cufflinks 3.696       Low
cufflinks 9.355     High  
cufflinks 15.262     High  
cufflinks 18.587     High High
cufflinks 3.502       Low
cufflinks 18.857     High High
cufflinks 16.87     High  
cufflinks 3.897       Low
cufflinks 19.107     High High
cufflinks 4.406       Low

0 Strain