Gene : Glyma.08G096200 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR10543:SF42 - 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED2, CHLOROPLASTIC-RELATED Genomic Order:  962
Name:  ? Glyma.08G096200 Secondary Identifier:  ? PAC:30538385
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-695 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G096200 0.5kb upstream 0.5kb upstream 3150 true Chr08: 7366236-7369385 Glycine max
Glyma.08G096200 0.5kb upstream 0.5kb upstream 500 false Chr08: 7366236-7366735 Glycine max
Glyma.08G096200 0.5kb downstream 0.5kb downstream 3150 true Chr08: 7366736-7369885 Glycine max
Glyma.08G096200 0.5kb downstream 0.5kb downstream 500 false Chr08: 7369386-7369885 Glycine max
Glyma.08G096200 1.0kb upstream 1.0kb upstream 3650 true Chr08: 7365736-7369385 Glycine max
Glyma.08G096200 1.0kb upstream 1.0kb upstream 1000 false Chr08: 7365736-7366735 Glycine max
Glyma.08G096200 1.0kb downstream 1.0kb downstream 3650 true Chr08: 7366736-7370385 Glycine max
Glyma.08G096200 1.0kb downstream 1.0kb downstream 1000 false Chr08: 7369386-7370385 Glycine max
Glyma.08G096200 2.0kb upstream 2.0kb upstream 4650 true Chr08: 7364736-7369385 Glycine max
Glyma.08G096200 2.0kb upstream 2.0kb upstream 2000 false Chr08: 7364736-7366735 Glycine max
Glyma.08G096200 2.0kb downstream 2.0kb downstream 4650 true Chr08: 7366736-7371385 Glycine max
Glyma.08G096200 2.0kb downstream 2.0kb downstream 2000 false Chr08: 7369386-7371385 Glycine max
Glyma.08G096200 5.0kb upstream 5.0kb upstream 7650 true Chr08: 7361736-7369385 Glycine max
Glyma.08G096200 5.0kb upstream 5.0kb upstream 5000 false Chr08: 7361736-7366735 Glycine max
Glyma.08G096200 5.0kb downstream 5.0kb downstream 7650 true Chr08: 7366736-7374385 Glycine max
Glyma.08G096200 5.0kb downstream 5.0kb downstream 5000 false Chr08: 7369386-7374385 Glycine max
Glyma.08G096200 10.0kb upstream 10.0kb upstream 12650 true Chr08: 7356736-7369385 Glycine max
Glyma.08G096200 10.0kb upstream 10.0kb upstream 10000 false Chr08: 7356736-7366735 Glycine max
Glyma.08G096200 10.0kb downstream 10.0kb downstream 12650 true Chr08: 7366736-7379385 Glycine max
Glyma.08G096200 10.0kb downstream 10.0kb downstream 10000 false Chr08: 7369386-7379385 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310479 5265 Fabidae View MSA
124068526 5270 Rosid View MSA
123741505 5271 Pentapetalae View MSA
122796781 5272 Eudicot View MSA
122050852 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.262813 0.0 0.979999    
cufflinks 0.352437 0.0 1.29756    
cufflinks 199.827 0.0 814.948 High High
cufflinks 2.81338 0.0 8.29768    
cufflinks 0.251278 0.0 0.937083    
cufflinks 0.143613 0.0 0.550149 Low  
cufflinks 13.5422 0.0 36.2014   High
cufflinks 1.03561 0.0 3.50011    
cufflinks 0.12418 0.0 0.478942 Low  
cufflinks 0.104        
cufflinks 0.072        
cufflinks 116.169     High High
cufflinks 0.091     Low  
cufflinks 0.255        
cufflinks 0.204        
cufflinks 0.122        
cufflinks 0.144        
cufflinks 14.928     High High
cufflinks 0.127        
cufflinks 0.301        
cufflinks 0.013     Low Low
cufflinks 0.26        
cufflinks 0.084     Low  
cufflinks 0.021     Low Low
cufflinks 0.233        
cufflinks 0.069        

0 Strain