Gene : Glyma.08G096300 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR11624:SF76 - PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT BETA-2, CHLOROPLASTIC-RELATED Genomic Order:  963
Name:  ? Glyma.08G096300 Secondary Identifier:  ? PAC:30540563
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5173 Glycine max pathologic  
Gmax PWY-5464 Glycine max pathologic  
Gmax PYRUVDEHYD-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G096300 0.5kb upstream 0.5kb upstream 5440 true Chr08: 7387899-7393338 Glycine max
Glyma.08G096300 0.5kb upstream 0.5kb upstream 500 false Chr08: 7392839-7393338 Glycine max
Glyma.08G096300 0.5kb downstream 0.5kb downstream 5440 true Chr08: 7387399-7392838 Glycine max
Glyma.08G096300 0.5kb downstream 0.5kb downstream 500 false Chr08: 7387399-7387898 Glycine max
Glyma.08G096300 1.0kb upstream 1.0kb upstream 5940 true Chr08: 7387899-7393838 Glycine max
Glyma.08G096300 1.0kb upstream 1.0kb upstream 1000 false Chr08: 7392839-7393838 Glycine max
Glyma.08G096300 1.0kb downstream 1.0kb downstream 5940 true Chr08: 7386899-7392838 Glycine max
Glyma.08G096300 1.0kb downstream 1.0kb downstream 1000 false Chr08: 7386899-7387898 Glycine max
Glyma.08G096300 2.0kb upstream 2.0kb upstream 6940 true Chr08: 7387899-7394838 Glycine max
Glyma.08G096300 2.0kb upstream 2.0kb upstream 2000 false Chr08: 7392839-7394838 Glycine max
Glyma.08G096300 2.0kb downstream 2.0kb downstream 6940 true Chr08: 7385899-7392838 Glycine max
Glyma.08G096300 2.0kb downstream 2.0kb downstream 2000 false Chr08: 7385899-7387898 Glycine max
Glyma.08G096300 5.0kb upstream 5.0kb upstream 9940 true Chr08: 7387899-7397838 Glycine max
Glyma.08G096300 5.0kb upstream 5.0kb upstream 5000 false Chr08: 7392839-7397838 Glycine max
Glyma.08G096300 5.0kb downstream 5.0kb downstream 9940 true Chr08: 7382899-7392838 Glycine max
Glyma.08G096300 5.0kb downstream 5.0kb downstream 5000 false Chr08: 7382899-7387898 Glycine max
Glyma.08G096300 10.0kb upstream 10.0kb upstream 14940 true Chr08: 7387899-7402838 Glycine max
Glyma.08G096300 10.0kb upstream 10.0kb upstream 10000 false Chr08: 7392839-7402838 Glycine max
Glyma.08G096300 10.0kb downstream 10.0kb downstream 14940 true Chr08: 7377899-7392838 Glycine max
Glyma.08G096300 10.0kb downstream 10.0kb downstream 10000 false Chr08: 7377899-7387898 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306477 5265 Fabidae View MSA
124062960 5270 Rosid View MSA
123741192 5271 Pentapetalae View MSA
122797029 5272 Eudicot View MSA
122045305 5273 Angiosperm View MSA
121346397 5274 Embryophyte View MSA
123428672 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.4645 0.0 68.0244 High High
cufflinks 20.301 0.0 60.9745 High  
cufflinks 9.71135 0.0 29.6494   Low
cufflinks 13.0853 0.0 38.8202    
cufflinks 19.4809 0.0 58.5192    
cufflinks 21.1234 0.0 63.5885    
cufflinks 15.7415 0.0 46.5847    
cufflinks 17.4271 0.0 51.8097    
cufflinks 10.4528 0.0 31.6047   Low
cufflinks 10.854     High  
cufflinks 0.919       Low
cufflinks 5.739        
cufflinks 11.469     High  
cufflinks 14.83     High  
cufflinks 0.664       Low
cufflinks 11.796     High  
cufflinks 3.948        
cufflinks 10.465     High  
cufflinks 12.977     High  
cufflinks 10.293     High  
cufflinks 1.838       Low
cufflinks 10.929     High  
cufflinks 16.295     High High
cufflinks 2.073       Low
cufflinks 11.017     High  
cufflinks 2.851        

0 Strain