Gene : Glyma.08G143900 G. max Wm82.a2.v1
Defline:  (1 of 2) KOG3172 - Small nuclear ribonucleoprotein Sm D3 Genomic Order:  1439
Name:  ? Glyma.08G143900 Secondary Identifier:  ? PAC:30537659
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G143900 0.5kb upstream 0.5kb upstream 3036 true Chr08: 10973479-10976514 Glycine max
Glyma.08G143900 0.5kb upstream 0.5kb upstream 500 false Chr08: 10976015-10976514 Glycine max
Glyma.08G143900 0.5kb downstream 0.5kb downstream 3036 true Chr08: 10972979-10976014 Glycine max
Glyma.08G143900 0.5kb downstream 0.5kb downstream 500 false Chr08: 10972979-10973478 Glycine max
Glyma.08G143900 1.0kb upstream 1.0kb upstream 3536 true Chr08: 10973479-10977014 Glycine max
Glyma.08G143900 1.0kb upstream 1.0kb upstream 1000 false Chr08: 10976015-10977014 Glycine max
Glyma.08G143900 1.0kb downstream 1.0kb downstream 3536 true Chr08: 10972479-10976014 Glycine max
Glyma.08G143900 1.0kb downstream 1.0kb downstream 1000 false Chr08: 10972479-10973478 Glycine max
Glyma.08G143900 2.0kb upstream 2.0kb upstream 4536 true Chr08: 10973479-10978014 Glycine max
Glyma.08G143900 2.0kb upstream 2.0kb upstream 2000 false Chr08: 10976015-10978014 Glycine max
Glyma.08G143900 2.0kb downstream 2.0kb downstream 4536 true Chr08: 10971479-10976014 Glycine max
Glyma.08G143900 2.0kb downstream 2.0kb downstream 2000 false Chr08: 10971479-10973478 Glycine max
Glyma.08G143900 5.0kb upstream 5.0kb upstream 7536 true Chr08: 10973479-10981014 Glycine max
Glyma.08G143900 5.0kb upstream 5.0kb upstream 5000 false Chr08: 10976015-10981014 Glycine max
Glyma.08G143900 5.0kb downstream 5.0kb downstream 7536 true Chr08: 10968479-10976014 Glycine max
Glyma.08G143900 5.0kb downstream 5.0kb downstream 5000 false Chr08: 10968479-10973478 Glycine max
Glyma.08G143900 10.0kb upstream 10.0kb upstream 12536 true Chr08: 10973479-10986014 Glycine max
Glyma.08G143900 10.0kb upstream 10.0kb upstream 10000 false Chr08: 10976015-10986014 Glycine max
Glyma.08G143900 10.0kb downstream 10.0kb downstream 12536 true Chr08: 10963479-10976014 Glycine max
Glyma.08G143900 10.0kb downstream 10.0kb downstream 10000 false Chr08: 10963479-10973478 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309842 5265 Fabidae View MSA
124071262 5270 Rosid View MSA
123746571 5271 Pentapetalae View MSA
122793733 5272 Eudicot View MSA
122047121 5273 Angiosperm View MSA
121348903 5274 Embryophyte View MSA
123424585 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.5068 0.0 48.1866    
cufflinks 22.9621 0.0 62.1232 High  
cufflinks 9.34996 0.0 27.5137   Low
cufflinks 15.5427 0.0 43.2127    
cufflinks 20.0685 0.0 54.6184 High  
cufflinks 23.0369 0.0 62.2707 High High
cufflinks 17.8407 0.0 48.9916    
cufflinks 16.4376 0.0 45.4612    
cufflinks 19.6844 0.0 53.6982 High  
cufflinks 3.048        
cufflinks 0.874       Low
cufflinks 3.545        
cufflinks 6.895       High
cufflinks 10.025     High High
cufflinks 1.036       Low
cufflinks 5.358        
cufflinks 2.072        
cufflinks 4.463        
cufflinks 5.543        
cufflinks 3.474        
cufflinks 1.407       Low
cufflinks 4.583        
cufflinks 6.266        
cufflinks 1.056       Low
cufflinks 4.557        
cufflinks 2.401        

0 Strain