Gene : Glyma.08G139300 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR23315:SF66 - CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 1 Genomic Order:  1393
Name:  ? Glyma.08G139300 Secondary Identifier:  ? PAC:30535745
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G139300 0.5kb upstream 0.5kb upstream 11766 true Chr08: 10653279-10665044 Glycine max
Glyma.08G139300 0.5kb upstream 0.5kb upstream 500 false Chr08: 10664545-10665044 Glycine max
Glyma.08G139300 0.5kb downstream 0.5kb downstream 11766 true Chr08: 10652779-10664544 Glycine max
Glyma.08G139300 0.5kb downstream 0.5kb downstream 500 false Chr08: 10652779-10653278 Glycine max
Glyma.08G139300 1.0kb upstream 1.0kb upstream 12266 true Chr08: 10653279-10665544 Glycine max
Glyma.08G139300 1.0kb upstream 1.0kb upstream 1000 false Chr08: 10664545-10665544 Glycine max
Glyma.08G139300 1.0kb downstream 1.0kb downstream 12266 true Chr08: 10652279-10664544 Glycine max
Glyma.08G139300 1.0kb downstream 1.0kb downstream 1000 false Chr08: 10652279-10653278 Glycine max
Glyma.08G139300 2.0kb upstream 2.0kb upstream 13266 true Chr08: 10653279-10666544 Glycine max
Glyma.08G139300 2.0kb upstream 2.0kb upstream 2000 false Chr08: 10664545-10666544 Glycine max
Glyma.08G139300 2.0kb downstream 2.0kb downstream 13266 true Chr08: 10651279-10664544 Glycine max
Glyma.08G139300 2.0kb downstream 2.0kb downstream 2000 false Chr08: 10651279-10653278 Glycine max
Glyma.08G139300 5.0kb upstream 5.0kb upstream 16266 true Chr08: 10653279-10669544 Glycine max
Glyma.08G139300 5.0kb upstream 5.0kb upstream 5000 false Chr08: 10664545-10669544 Glycine max
Glyma.08G139300 5.0kb downstream 5.0kb downstream 16266 true Chr08: 10648279-10664544 Glycine max
Glyma.08G139300 5.0kb downstream 5.0kb downstream 5000 false Chr08: 10648279-10653278 Glycine max
Glyma.08G139300 10.0kb upstream 10.0kb upstream 21266 true Chr08: 10653279-10674544 Glycine max
Glyma.08G139300 10.0kb upstream 10.0kb upstream 10000 false Chr08: 10664545-10674544 Glycine max
Glyma.08G139300 10.0kb downstream 10.0kb downstream 21266 true Chr08: 10643279-10664544 Glycine max
Glyma.08G139300 10.0kb downstream 10.0kb downstream 10000 false Chr08: 10643279-10653278 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122048106 5273 Angiosperm View MSA
122311347 5265 Fabidae View MSA
124063700 5270 Rosid View MSA
123740295 5271 Pentapetalae View MSA
122787406 5272 Eudicot View MSA
121347002 5274 Embryophyte View MSA
123380478 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.00013 0.0 10.6718    
cufflinks 8.84131 0.0 24.4124    
cufflinks 2.24127 0.0 6.06842   Low
cufflinks 15.6297 0.0 46.2559   High
cufflinks 8.99225 0.0 24.8447    
cufflinks 4.67271 0.0 12.4846    
cufflinks 9.21878 0.0 25.5011    
cufflinks 12.6649 0.0 36.4358    
cufflinks 8.14388 0.0 22.3403    
cufflinks 13.854     High High
cufflinks 0.34       Low
cufflinks 3.085        
cufflinks 8.21     High  
cufflinks 7.375     High  
cufflinks 1.236        
cufflinks 6.332        
cufflinks 1.952        
cufflinks 7.839     High  
cufflinks 7.205        
cufflinks 5.137        
cufflinks 0.85       Low
cufflinks 5.931        
cufflinks 6.188        
cufflinks 0.353       Low
cufflinks 4.78        
cufflinks 1.675        

0 Strain