Gene : Glyma.08G139500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR20426:SF0 - RIBOSOME BIOGENESIS PROTEIN TSR3 HOMOLOG Genomic Order:  1395
Name:  ? Glyma.08G139500 Secondary Identifier:  ? PAC:30537037
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G139500 0.5kb upstream 0.5kb upstream 5690 true Chr08: 10677857-10683546 Glycine max
Glyma.08G139500 0.5kb upstream 0.5kb upstream 500 false Chr08: 10677857-10678356 Glycine max
Glyma.08G139500 0.5kb downstream 0.5kb downstream 5690 true Chr08: 10678357-10684046 Glycine max
Glyma.08G139500 0.5kb downstream 0.5kb downstream 500 false Chr08: 10683547-10684046 Glycine max
Glyma.08G139500 1.0kb upstream 1.0kb upstream 6190 true Chr08: 10677357-10683546 Glycine max
Glyma.08G139500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 10677357-10678356 Glycine max
Glyma.08G139500 1.0kb downstream 1.0kb downstream 6190 true Chr08: 10678357-10684546 Glycine max
Glyma.08G139500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 10683547-10684546 Glycine max
Glyma.08G139500 2.0kb upstream 2.0kb upstream 7190 true Chr08: 10676357-10683546 Glycine max
Glyma.08G139500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 10676357-10678356 Glycine max
Glyma.08G139500 2.0kb downstream 2.0kb downstream 7190 true Chr08: 10678357-10685546 Glycine max
Glyma.08G139500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 10683547-10685546 Glycine max
Glyma.08G139500 5.0kb upstream 5.0kb upstream 10190 true Chr08: 10673357-10683546 Glycine max
Glyma.08G139500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 10673357-10678356 Glycine max
Glyma.08G139500 5.0kb downstream 5.0kb downstream 10190 true Chr08: 10678357-10688546 Glycine max
Glyma.08G139500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 10683547-10688546 Glycine max
Glyma.08G139500 10.0kb upstream 10.0kb upstream 15190 true Chr08: 10668357-10683546 Glycine max
Glyma.08G139500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 10668357-10678356 Glycine max
Glyma.08G139500 10.0kb downstream 10.0kb downstream 15190 true Chr08: 10678357-10693546 Glycine max
Glyma.08G139500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 10683547-10693546 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308967 5265 Fabidae View MSA
124061173 5270 Rosid View MSA
123737930 5271 Pentapetalae View MSA
122791204 5272 Eudicot View MSA
122042586 5273 Angiosperm View MSA
121343927 5274 Embryophyte View MSA
123426113 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.8432 0.0 63.634   High
cufflinks 6.73705 0.0 45.5942   Low
cufflinks 8.45179 0.0 65.931    
cufflinks 10.2976 0.0 79.5132    
cufflinks 11.3361 0.0 84.3245    
cufflinks 8.80613 0.0 71.6861    
cufflinks 11.7129 0.0 68.5951    
cufflinks 10.92 0.0 73.435    
cufflinks 8.55329 0.0 59.2753    
cufflinks 0.53        
cufflinks 0.267       Low
cufflinks 0.503        
cufflinks 0.964       High
cufflinks 1.084       High
cufflinks 0.332        
cufflinks 0.385        
cufflinks 0.369        
cufflinks 0.529        
cufflinks 0.587        
cufflinks 0.405        
cufflinks 0.283       Low
cufflinks 0.463        
cufflinks 0.466        
cufflinks 0.358        
cufflinks 0.386        
cufflinks 0.43        

0 Strain