Gene : Glyma.08G123200 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR12599:SF2 - PCD/DCOH-LIKE PROTEIN 2 Genomic Order:  1232
Name:  ? Glyma.08G123200 Secondary Identifier:  ? PAC:30540929
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G123200 0.5kb upstream 0.5kb upstream 3668 true Chr08: 9476599-9480266 Glycine max
Glyma.08G123200 0.5kb upstream 0.5kb upstream 500 false Chr08: 9476599-9477098 Glycine max
Glyma.08G123200 0.5kb downstream 0.5kb downstream 3668 true Chr08: 9477099-9480766 Glycine max
Glyma.08G123200 0.5kb downstream 0.5kb downstream 500 false Chr08: 9480267-9480766 Glycine max
Glyma.08G123200 1.0kb upstream 1.0kb upstream 4168 true Chr08: 9476099-9480266 Glycine max
Glyma.08G123200 1.0kb upstream 1.0kb upstream 1000 false Chr08: 9476099-9477098 Glycine max
Glyma.08G123200 1.0kb downstream 1.0kb downstream 4168 true Chr08: 9477099-9481266 Glycine max
Glyma.08G123200 1.0kb downstream 1.0kb downstream 1000 false Chr08: 9480267-9481266 Glycine max
Glyma.08G123200 2.0kb upstream 2.0kb upstream 5168 true Chr08: 9475099-9480266 Glycine max
Glyma.08G123200 2.0kb upstream 2.0kb upstream 2000 false Chr08: 9475099-9477098 Glycine max
Glyma.08G123200 2.0kb downstream 2.0kb downstream 5168 true Chr08: 9477099-9482266 Glycine max
Glyma.08G123200 2.0kb downstream 2.0kb downstream 2000 false Chr08: 9480267-9482266 Glycine max
Glyma.08G123200 5.0kb upstream 5.0kb upstream 8168 true Chr08: 9472099-9480266 Glycine max
Glyma.08G123200 5.0kb upstream 5.0kb upstream 5000 false Chr08: 9472099-9477098 Glycine max
Glyma.08G123200 5.0kb downstream 5.0kb downstream 8168 true Chr08: 9477099-9485266 Glycine max
Glyma.08G123200 5.0kb downstream 5.0kb downstream 5000 false Chr08: 9480267-9485266 Glycine max
Glyma.08G123200 10.0kb upstream 10.0kb upstream 13168 true Chr08: 9467099-9480266 Glycine max
Glyma.08G123200 10.0kb upstream 10.0kb upstream 10000 false Chr08: 9467099-9477098 Glycine max
Glyma.08G123200 10.0kb downstream 10.0kb downstream 13168 true Chr08: 9477099-9490266 Glycine max
Glyma.08G123200 10.0kb downstream 10.0kb downstream 10000 false Chr08: 9480267-9490266 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312524 5265 Fabidae View MSA
124068632 5270 Rosid View MSA
123742816 5271 Pentapetalae View MSA
122797926 5272 Eudicot View MSA
122046446 5273 Angiosperm View MSA
121348467 5274 Embryophyte View MSA
123427509 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.96763 0.0 35.2239    
cufflinks 15.3748 0.0 79.9482   High
cufflinks 5.81544 0.0 33.3223   Low
cufflinks 11.9185 0.0 53.1751    
cufflinks 7.91122 0.0 46.1002    
cufflinks 10.5251 0.0 56.1457    
cufflinks 5.29716 0.0 26.6563   Low
cufflinks 10.6109 0.0 41.5248    
cufflinks 7.48253 0.0 39.613    
cufflinks 0.596        
cufflinks 0.032     Low Low
cufflinks 0.623        
cufflinks 0.507        
cufflinks 0.55        
cufflinks 0.02     Low Low
cufflinks 0.446        
cufflinks 0.191        
cufflinks 1.007       High
cufflinks 0.908       High
cufflinks 0.404        
cufflinks 0.084        
cufflinks 0.45        
cufflinks 0.516        
cufflinks 0.036     Low Low
cufflinks 0.464        
cufflinks 0.189        

0 Strain