Gene : Glyma.08G125500 G. max Wm82.a2.v1
Defline:  (1 of 2) 3.4.22.54 - Calpain-3 / Muscle-specific calcium-activated neutral protease 3 Genomic Order:  1255
Name:  ? Glyma.08G125500 Secondary Identifier:  ? PAC:30541305
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G125500 0.5kb upstream 0.5kb upstream 20886 true Chr08: 9641908-9662793 Glycine max
Glyma.08G125500 0.5kb upstream 0.5kb upstream 500 false Chr08: 9641908-9642407 Glycine max
Glyma.08G125500 0.5kb downstream 0.5kb downstream 20886 true Chr08: 9642408-9663293 Glycine max
Glyma.08G125500 0.5kb downstream 0.5kb downstream 500 false Chr08: 9662794-9663293 Glycine max
Glyma.08G125500 1.0kb upstream 1.0kb upstream 21386 true Chr08: 9641408-9662793 Glycine max
Glyma.08G125500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 9641408-9642407 Glycine max
Glyma.08G125500 1.0kb downstream 1.0kb downstream 21386 true Chr08: 9642408-9663793 Glycine max
Glyma.08G125500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 9662794-9663793 Glycine max
Glyma.08G125500 2.0kb upstream 2.0kb upstream 22386 true Chr08: 9640408-9662793 Glycine max
Glyma.08G125500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 9640408-9642407 Glycine max
Glyma.08G125500 2.0kb downstream 2.0kb downstream 22386 true Chr08: 9642408-9664793 Glycine max
Glyma.08G125500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 9662794-9664793 Glycine max
Glyma.08G125500 5.0kb upstream 5.0kb upstream 25386 true Chr08: 9637408-9662793 Glycine max
Glyma.08G125500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 9637408-9642407 Glycine max
Glyma.08G125500 5.0kb downstream 5.0kb downstream 25386 true Chr08: 9642408-9667793 Glycine max
Glyma.08G125500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 9662794-9667793 Glycine max
Glyma.08G125500 10.0kb upstream 10.0kb upstream 30386 true Chr08: 9632408-9662793 Glycine max
Glyma.08G125500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 9632408-9642407 Glycine max
Glyma.08G125500 10.0kb downstream 10.0kb downstream 30386 true Chr08: 9642408-9672793 Glycine max
Glyma.08G125500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 9662794-9672793 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300937 5265 Fabidae View MSA
124067858 5270 Rosid View MSA
123739465 5271 Pentapetalae View MSA
122788693 5272 Eudicot View MSA
122043542 5273 Angiosperm View MSA
121345747 5274 Embryophyte View MSA
123380263 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.65386 0.0 27.6267    
cufflinks 8.0837 0.0 29.6476    
cufflinks 9.87982 0.0 32.3701   High
cufflinks 7.1987 0.0 28.6426    
cufflinks 5.40678 0.0 18.6925    
cufflinks 2.52489 0.0 7.70962   Low
cufflinks 9.50651 0.0 30.6955    
cufflinks 5.6135 0.0 19.4446    
cufflinks 5.39741 0.0 18.6031    
cufflinks 0.887        
cufflinks 0.527       Low
cufflinks 1.536        
cufflinks 0.808        
cufflinks 0.748        
cufflinks 1.126        
cufflinks 1.511        
cufflinks 0.797        
cufflinks 1.602        
cufflinks 1.736       High
cufflinks 1.534        
cufflinks 0.55       Low
cufflinks 1.651       High
cufflinks 1.527        
cufflinks 0.565       Low
cufflinks 1.469        
cufflinks 0.546       Low

0 Strain