Gene : Glyma.08G172200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR21043:SF1 - PROTEIN IOJAP, CHLOROPLASTIC Genomic Order:  1722
Name:  ? Glyma.08G172200 Secondary Identifier:  ? PAC:30536562
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G172200 0.5kb upstream 0.5kb upstream 5310 true Chr08: 13706655-13711964 Glycine max
Glyma.08G172200 0.5kb upstream 0.5kb upstream 500 false Chr08: 13711465-13711964 Glycine max
Glyma.08G172200 0.5kb downstream 0.5kb downstream 5310 true Chr08: 13706155-13711464 Glycine max
Glyma.08G172200 0.5kb downstream 0.5kb downstream 500 false Chr08: 13706155-13706654 Glycine max
Glyma.08G172200 1.0kb upstream 1.0kb upstream 5810 true Chr08: 13706655-13712464 Glycine max
Glyma.08G172200 1.0kb upstream 1.0kb upstream 1000 false Chr08: 13711465-13712464 Glycine max
Glyma.08G172200 1.0kb downstream 1.0kb downstream 5810 true Chr08: 13705655-13711464 Glycine max
Glyma.08G172200 1.0kb downstream 1.0kb downstream 1000 false Chr08: 13705655-13706654 Glycine max
Glyma.08G172200 2.0kb upstream 2.0kb upstream 6810 true Chr08: 13706655-13713464 Glycine max
Glyma.08G172200 2.0kb upstream 2.0kb upstream 2000 false Chr08: 13711465-13713464 Glycine max
Glyma.08G172200 2.0kb downstream 2.0kb downstream 6810 true Chr08: 13704655-13711464 Glycine max
Glyma.08G172200 2.0kb downstream 2.0kb downstream 2000 false Chr08: 13704655-13706654 Glycine max
Glyma.08G172200 5.0kb upstream 5.0kb upstream 9810 true Chr08: 13706655-13716464 Glycine max
Glyma.08G172200 5.0kb upstream 5.0kb upstream 5000 false Chr08: 13711465-13716464 Glycine max
Glyma.08G172200 5.0kb downstream 5.0kb downstream 9810 true Chr08: 13701655-13711464 Glycine max
Glyma.08G172200 5.0kb downstream 5.0kb downstream 5000 false Chr08: 13701655-13706654 Glycine max
Glyma.08G172200 10.0kb upstream 10.0kb upstream 14810 true Chr08: 13706655-13721464 Glycine max
Glyma.08G172200 10.0kb upstream 10.0kb upstream 10000 false Chr08: 13711465-13721464 Glycine max
Glyma.08G172200 10.0kb downstream 10.0kb downstream 14810 true Chr08: 13696655-13711464 Glycine max
Glyma.08G172200 10.0kb downstream 10.0kb downstream 10000 false Chr08: 13696655-13706654 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300008 5265 Fabidae View MSA
124067704 5270 Rosid View MSA
123743843 5271 Pentapetalae View MSA
122785584 5272 Eudicot View MSA
122043136 5273 Angiosperm View MSA
121343948 5274 Embryophyte View MSA
123426763 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.2828 0.0 35.9241    
cufflinks 13.4711 0.0 36.3861    
cufflinks 20.1507 0.0 53.7831   High
cufflinks 6.72932 0.0 19.26    
cufflinks 5.53968 0.0 16.2931    
cufflinks 7.97718 0.0 22.4131    
cufflinks 8.75668 0.0 24.4674    
cufflinks 6.59366 0.0 18.9588    
cufflinks 4.10159 0.0 12.5571   Low
cufflinks 1.866        
cufflinks 0.855        
cufflinks 5.439        
cufflinks 1.168        
cufflinks 1.447        
cufflinks 0.362       Low
cufflinks 8.059     High High
cufflinks 0.728       Low
cufflinks 2.916        
cufflinks 3.313        
cufflinks 8.309     High High
cufflinks 0.598       Low
cufflinks 7.497     High High
cufflinks 7.306       High
cufflinks 1.022        
cufflinks 8.498     High High
cufflinks 0.728       Low

0 Strain