Gene : Glyma.08G172900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR15588:SF9 - U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM8 Genomic Order:  1729
Name:  ? Glyma.08G172900 Secondary Identifier:  ? PAC:30537249
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G172900 0.5kb upstream 0.5kb upstream 5228 true Chr08: 13746182-13751409 Glycine max
Glyma.08G172900 0.5kb upstream 0.5kb upstream 500 false Chr08: 13750910-13751409 Glycine max
Glyma.08G172900 0.5kb downstream 0.5kb downstream 5228 true Chr08: 13745682-13750909 Glycine max
Glyma.08G172900 0.5kb downstream 0.5kb downstream 500 false Chr08: 13745682-13746181 Glycine max
Glyma.08G172900 1.0kb upstream 1.0kb upstream 5728 true Chr08: 13746182-13751909 Glycine max
Glyma.08G172900 1.0kb upstream 1.0kb upstream 1000 false Chr08: 13750910-13751909 Glycine max
Glyma.08G172900 1.0kb downstream 1.0kb downstream 5728 true Chr08: 13745182-13750909 Glycine max
Glyma.08G172900 1.0kb downstream 1.0kb downstream 1000 false Chr08: 13745182-13746181 Glycine max
Glyma.08G172900 2.0kb upstream 2.0kb upstream 6728 true Chr08: 13746182-13752909 Glycine max
Glyma.08G172900 2.0kb upstream 2.0kb upstream 2000 false Chr08: 13750910-13752909 Glycine max
Glyma.08G172900 2.0kb downstream 2.0kb downstream 6728 true Chr08: 13744182-13750909 Glycine max
Glyma.08G172900 2.0kb downstream 2.0kb downstream 2000 false Chr08: 13744182-13746181 Glycine max
Glyma.08G172900 5.0kb upstream 5.0kb upstream 9728 true Chr08: 13746182-13755909 Glycine max
Glyma.08G172900 5.0kb upstream 5.0kb upstream 5000 false Chr08: 13750910-13755909 Glycine max
Glyma.08G172900 5.0kb downstream 5.0kb downstream 9728 true Chr08: 13741182-13750909 Glycine max
Glyma.08G172900 5.0kb downstream 5.0kb downstream 5000 false Chr08: 13741182-13746181 Glycine max
Glyma.08G172900 10.0kb upstream 10.0kb upstream 14728 true Chr08: 13746182-13760909 Glycine max
Glyma.08G172900 10.0kb upstream 10.0kb upstream 10000 false Chr08: 13750910-13760909 Glycine max
Glyma.08G172900 10.0kb downstream 10.0kb downstream 14728 true Chr08: 13736182-13750909 Glycine max
Glyma.08G172900 10.0kb downstream 10.0kb downstream 10000 false Chr08: 13736182-13746181 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309330 5265 Fabidae View MSA
124065490 5270 Rosid View MSA
123746583 5271 Pentapetalae View MSA
122790911 5272 Eudicot View MSA
122047376 5273 Angiosperm View MSA
121345088 5274 Embryophyte View MSA
123423767 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.4059 0.0 101.888 High  
cufflinks 31.8758 0.0 127.671 High  
cufflinks 12.8561 0.0 58.4618   Low
cufflinks 19.3187 0.0 85.0153    
cufflinks 32.8759 0.0 131.236 High  
cufflinks 28.7525 0.0 102.889 High  
cufflinks 27.2676 0.0 99.2403 High  
cufflinks 26.8633 0.0 110.558 High  
cufflinks 27.2314 0.0 104.464 High  
cufflinks 1.028        
cufflinks 0.296       Low
cufflinks 0.552        
cufflinks 1.599       High
cufflinks 2.089       High
cufflinks 0.359       Low
cufflinks 1.259        
cufflinks 0.465        
cufflinks 0.752        
cufflinks 1.102        
cufflinks 1.165        
cufflinks 0.501        
cufflinks 1.108        
cufflinks 1.253        
cufflinks 0.398       Low
cufflinks 1.268        
cufflinks 0.702        

0 Strain