Gene : Glyma.08G173300 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23105:SF31 - RIBOSOMAL L1 DOMAIN-CONTAINING PROTEIN 1 Genomic Order:  1733
Name:  ? Glyma.08G173300 Secondary Identifier:  ? PAC:30538431
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G173300 0.5kb upstream 0.5kb upstream 2565 true Chr08: 13790324-13792888 Glycine max
Glyma.08G173300 0.5kb upstream 0.5kb upstream 500 false Chr08: 13790324-13790823 Glycine max
Glyma.08G173300 0.5kb downstream 0.5kb downstream 2565 true Chr08: 13790824-13793388 Glycine max
Glyma.08G173300 0.5kb downstream 0.5kb downstream 500 false Chr08: 13792889-13793388 Glycine max
Glyma.08G173300 1.0kb upstream 1.0kb upstream 3065 true Chr08: 13789824-13792888 Glycine max
Glyma.08G173300 1.0kb upstream 1.0kb upstream 1000 false Chr08: 13789824-13790823 Glycine max
Glyma.08G173300 1.0kb downstream 1.0kb downstream 3065 true Chr08: 13790824-13793888 Glycine max
Glyma.08G173300 1.0kb downstream 1.0kb downstream 1000 false Chr08: 13792889-13793888 Glycine max
Glyma.08G173300 2.0kb upstream 2.0kb upstream 4065 true Chr08: 13788824-13792888 Glycine max
Glyma.08G173300 2.0kb upstream 2.0kb upstream 2000 false Chr08: 13788824-13790823 Glycine max
Glyma.08G173300 2.0kb downstream 2.0kb downstream 4065 true Chr08: 13790824-13794888 Glycine max
Glyma.08G173300 2.0kb downstream 2.0kb downstream 2000 false Chr08: 13792889-13794888 Glycine max
Glyma.08G173300 5.0kb upstream 5.0kb upstream 7065 true Chr08: 13785824-13792888 Glycine max
Glyma.08G173300 5.0kb upstream 5.0kb upstream 5000 false Chr08: 13785824-13790823 Glycine max
Glyma.08G173300 5.0kb downstream 5.0kb downstream 7065 true Chr08: 13790824-13797888 Glycine max
Glyma.08G173300 5.0kb downstream 5.0kb downstream 5000 false Chr08: 13792889-13797888 Glycine max
Glyma.08G173300 10.0kb upstream 10.0kb upstream 12065 true Chr08: 13780824-13792888 Glycine max
Glyma.08G173300 10.0kb upstream 10.0kb upstream 10000 false Chr08: 13780824-13790823 Glycine max
Glyma.08G173300 10.0kb downstream 10.0kb downstream 12065 true Chr08: 13790824-13802888 Glycine max
Glyma.08G173300 10.0kb downstream 10.0kb downstream 10000 false Chr08: 13792889-13802888 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308083 5265 Fabidae View MSA
124067749 5270 Rosid View MSA
123741990 5271 Pentapetalae View MSA
122792570 5272 Eudicot View MSA
122042558 5273 Angiosperm View MSA
121347008 5274 Embryophyte View MSA
123426351 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.9945 0.0 40.0578   High
cufflinks 5.72843 0.0 15.8024    
cufflinks 3.83553 0.0 11.0182   Low
cufflinks 5.24864 0.0 14.5853    
cufflinks 9.78124 0.0 26.1837    
cufflinks 4.25165 0.0 12.0534   Low
cufflinks 7.28729 0.0 19.7628    
cufflinks 6.30411 0.0 17.2458    
cufflinks 6.00683 0.0 16.4882    
cufflinks 5.494        
cufflinks 1.845       Low
cufflinks 7.61     High  
cufflinks 15.569     High High
cufflinks 24.312     High High
cufflinks 1.56       Low
cufflinks 4.251        
cufflinks 5.97        
cufflinks 5.68        
cufflinks 10.699     High High
cufflinks 2.564        
cufflinks 1.795       Low
cufflinks 3.55        
cufflinks 7.822     High  
cufflinks 1.765       Low
cufflinks 3.519        
cufflinks 4.714        

0 Strain