Gene : Glyma.08G173700 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR34369:SF2 - PHOTOSYSTEM II 10 KDA POLYPEPTIDE, CHLOROPLASTIC Genomic Order:  1737
Name:  ? Glyma.08G173700 Secondary Identifier:  ? PAC:30537173
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G173700 0.5kb upstream 0.5kb upstream 3343 true Chr08: 13837958-13841300 Glycine max
Glyma.08G173700 0.5kb upstream 0.5kb upstream 500 false Chr08: 13837958-13838457 Glycine max
Glyma.08G173700 0.5kb downstream 0.5kb downstream 3343 true Chr08: 13838458-13841800 Glycine max
Glyma.08G173700 0.5kb downstream 0.5kb downstream 500 false Chr08: 13841301-13841800 Glycine max
Glyma.08G173700 1.0kb upstream 1.0kb upstream 3843 true Chr08: 13837458-13841300 Glycine max
Glyma.08G173700 1.0kb upstream 1.0kb upstream 1000 false Chr08: 13837458-13838457 Glycine max
Glyma.08G173700 1.0kb downstream 1.0kb downstream 3843 true Chr08: 13838458-13842300 Glycine max
Glyma.08G173700 1.0kb downstream 1.0kb downstream 1000 false Chr08: 13841301-13842300 Glycine max
Glyma.08G173700 2.0kb upstream 2.0kb upstream 4843 true Chr08: 13836458-13841300 Glycine max
Glyma.08G173700 2.0kb upstream 2.0kb upstream 2000 false Chr08: 13836458-13838457 Glycine max
Glyma.08G173700 2.0kb downstream 2.0kb downstream 4843 true Chr08: 13838458-13843300 Glycine max
Glyma.08G173700 2.0kb downstream 2.0kb downstream 2000 false Chr08: 13841301-13843300 Glycine max
Glyma.08G173700 5.0kb upstream 5.0kb upstream 7843 true Chr08: 13833458-13841300 Glycine max
Glyma.08G173700 5.0kb upstream 5.0kb upstream 5000 false Chr08: 13833458-13838457 Glycine max
Glyma.08G173700 5.0kb downstream 5.0kb downstream 7843 true Chr08: 13838458-13846300 Glycine max
Glyma.08G173700 5.0kb downstream 5.0kb downstream 5000 false Chr08: 13841301-13846300 Glycine max
Glyma.08G173700 10.0kb upstream 10.0kb upstream 12843 true Chr08: 13828458-13841300 Glycine max
Glyma.08G173700 10.0kb upstream 10.0kb upstream 10000 false Chr08: 13828458-13838457 Glycine max
Glyma.08G173700 10.0kb downstream 10.0kb downstream 12843 true Chr08: 13838458-13851300 Glycine max
Glyma.08G173700 10.0kb downstream 10.0kb downstream 10000 false Chr08: 13841301-13851300 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301375 5265 Fabidae View MSA
124063437 5270 Rosid View MSA
123736551 5271 Pentapetalae View MSA
122791395 5272 Eudicot View MSA
122042523 5273 Angiosperm View MSA
121350947 5274 Embryophyte View MSA
123427183 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1954.58 0.0 11793.3 High High
cufflinks 755.545 0.0 3144.55 High  
cufflinks 635.164 0.0 2516.06 High  
cufflinks 363.868 0.0 1236.12 High  
cufflinks 86.8522 0.0 237.572 High Low
cufflinks 118.03 0.0 332.436 High  
cufflinks 397.885 0.0 1374.7 High  
cufflinks 465.622 0.0 1688.32 High  
cufflinks 56.0281 0.0 150.004 High Low
cufflinks 106.652     High  
cufflinks 6.97     High  
cufflinks 109.123     High  
cufflinks 3.907        
cufflinks 2.088       Low
cufflinks 3.4       Low
cufflinks 351.869     High High
cufflinks 4.284        
cufflinks 91.005     High  
cufflinks 105.795     High  
cufflinks 435.904     High High
cufflinks 4.047        
cufflinks 394.852     High High
cufflinks 242.648     High  
cufflinks 4.732        
cufflinks 410.609     High High
cufflinks 3.285       Low

0 Strain