Gene : Glyma.08G161300 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31989:SF48 - PROTEIN SOMBRERO Genomic Order:  1613
Name:  ? Glyma.08G161300 Secondary Identifier:  ? PAC:30538447
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G161300 0.5kb upstream 0.5kb upstream 4160 true Chr08: 12508840-12512999 Glycine max
Glyma.08G161300 0.5kb upstream 0.5kb upstream 500 false Chr08: 12512500-12512999 Glycine max
Glyma.08G161300 0.5kb downstream 0.5kb downstream 4160 true Chr08: 12508340-12512499 Glycine max
Glyma.08G161300 0.5kb downstream 0.5kb downstream 500 false Chr08: 12508340-12508839 Glycine max
Glyma.08G161300 1.0kb upstream 1.0kb upstream 4660 true Chr08: 12508840-12513499 Glycine max
Glyma.08G161300 1.0kb upstream 1.0kb upstream 1000 false Chr08: 12512500-12513499 Glycine max
Glyma.08G161300 1.0kb downstream 1.0kb downstream 4660 true Chr08: 12507840-12512499 Glycine max
Glyma.08G161300 1.0kb downstream 1.0kb downstream 1000 false Chr08: 12507840-12508839 Glycine max
Glyma.08G161300 2.0kb upstream 2.0kb upstream 5660 true Chr08: 12508840-12514499 Glycine max
Glyma.08G161300 2.0kb upstream 2.0kb upstream 2000 false Chr08: 12512500-12514499 Glycine max
Glyma.08G161300 2.0kb downstream 2.0kb downstream 5660 true Chr08: 12506840-12512499 Glycine max
Glyma.08G161300 2.0kb downstream 2.0kb downstream 2000 false Chr08: 12506840-12508839 Glycine max
Glyma.08G161300 5.0kb upstream 5.0kb upstream 8660 true Chr08: 12508840-12517499 Glycine max
Glyma.08G161300 5.0kb upstream 5.0kb upstream 5000 false Chr08: 12512500-12517499 Glycine max
Glyma.08G161300 5.0kb downstream 5.0kb downstream 8660 true Chr08: 12503840-12512499 Glycine max
Glyma.08G161300 5.0kb downstream 5.0kb downstream 5000 false Chr08: 12503840-12508839 Glycine max
Glyma.08G161300 10.0kb upstream 10.0kb upstream 13660 true Chr08: 12508840-12522499 Glycine max
Glyma.08G161300 10.0kb upstream 10.0kb upstream 10000 false Chr08: 12512500-12522499 Glycine max
Glyma.08G161300 10.0kb downstream 10.0kb downstream 13660 true Chr08: 12498840-12512499 Glycine max
Glyma.08G161300 10.0kb downstream 10.0kb downstream 10000 false Chr08: 12498840-12508839 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299411 5265 Fabidae View MSA
124063722 5270 Rosid View MSA
123740377 5271 Pentapetalae View MSA
122788631 5272 Eudicot View MSA
122045964 5273 Angiosperm View MSA
121351431 5274 Embryophyte View MSA
123382163 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0252339 0.0 0.109303 Low Low
cufflinks 5.53934 0.0 16.3533    
cufflinks 16.3035 0.0 43.7687   High
cufflinks 0.452056 0.0 1.69857    
cufflinks 0.13489 0.0 0.532279 Low  
cufflinks 2.8651 0.0 9.27331    
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.912        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 5.976       High
cufflinks 5.948       High
cufflinks 0.264       Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.954        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.913        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.662        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.389        

0 Strain