Gene : Glyma.08G148900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR37173:SF1 - HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN Genomic Order:  1489
Name:  ? Glyma.08G148900 Secondary Identifier:  ? PAC:30538554
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G148900 0.5kb upstream 0.5kb upstream 14903 true Chr08: 11406413-11421315 Glycine max
Glyma.08G148900 0.5kb upstream 0.5kb upstream 500 false Chr08: 11420816-11421315 Glycine max
Glyma.08G148900 0.5kb downstream 0.5kb downstream 14903 true Chr08: 11405913-11420815 Glycine max
Glyma.08G148900 0.5kb downstream 0.5kb downstream 500 false Chr08: 11405913-11406412 Glycine max
Glyma.08G148900 1.0kb upstream 1.0kb upstream 15403 true Chr08: 11406413-11421815 Glycine max
Glyma.08G148900 1.0kb upstream 1.0kb upstream 1000 false Chr08: 11420816-11421815 Glycine max
Glyma.08G148900 1.0kb downstream 1.0kb downstream 15403 true Chr08: 11405413-11420815 Glycine max
Glyma.08G148900 1.0kb downstream 1.0kb downstream 1000 false Chr08: 11405413-11406412 Glycine max
Glyma.08G148900 2.0kb upstream 2.0kb upstream 16403 true Chr08: 11406413-11422815 Glycine max
Glyma.08G148900 2.0kb upstream 2.0kb upstream 2000 false Chr08: 11420816-11422815 Glycine max
Glyma.08G148900 2.0kb downstream 2.0kb downstream 16403 true Chr08: 11404413-11420815 Glycine max
Glyma.08G148900 2.0kb downstream 2.0kb downstream 2000 false Chr08: 11404413-11406412 Glycine max
Glyma.08G148900 5.0kb upstream 5.0kb upstream 19403 true Chr08: 11406413-11425815 Glycine max
Glyma.08G148900 5.0kb upstream 5.0kb upstream 5000 false Chr08: 11420816-11425815 Glycine max
Glyma.08G148900 5.0kb downstream 5.0kb downstream 19403 true Chr08: 11401413-11420815 Glycine max
Glyma.08G148900 5.0kb downstream 5.0kb downstream 5000 false Chr08: 11401413-11406412 Glycine max
Glyma.08G148900 10.0kb upstream 10.0kb upstream 24403 true Chr08: 11406413-11430815 Glycine max
Glyma.08G148900 10.0kb upstream 10.0kb upstream 10000 false Chr08: 11420816-11430815 Glycine max
Glyma.08G148900 10.0kb downstream 10.0kb downstream 24403 true Chr08: 11396413-11420815 Glycine max
Glyma.08G148900 10.0kb downstream 10.0kb downstream 10000 false Chr08: 11396413-11406412 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304318 5265 Fabidae View MSA
124065426 5270 Rosid View MSA
123746195 5271 Pentapetalae View MSA
122787235 5272 Eudicot View MSA
122045095 5273 Angiosperm View MSA
121345714 5274 Embryophyte View MSA
123425917 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.35308 0.0 23.2988   High
cufflinks 2.7356 0.0 21.7162   High
cufflinks 1.68552 0.0 15.8083    
cufflinks 1.91556 0.0 16.9764    
cufflinks 1.95487 0.0 15.0902    
cufflinks 2.12607 0.0 14.715    
cufflinks 1.5052 0.0 11.7745   Low
cufflinks 2.16252 0.0 17.3024    
cufflinks 2.37983 0.0 18.6558    
cufflinks 0.016     Low  
cufflinks 0.024     Low  
cufflinks 0.018     Low  
cufflinks 0.016     Low  
cufflinks 0.017     Low  
cufflinks 0.048     Low High
cufflinks 0.023     Low  
cufflinks 0.016     Low  
cufflinks 0.026     Low  
cufflinks 0.032     Low High
cufflinks 0.015     Low Low
cufflinks 0.024     Low  
cufflinks 0.018     Low  
cufflinks 0.031     Low High
cufflinks 0.021     Low  
cufflinks 0.018     Low  
cufflinks 0.019     Low  

0 Strain