Gene : Glyma.08G149500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR10917//PTHR10917:SF1 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 Genomic Order:  1495
Name:  ? Glyma.08G149500 Secondary Identifier:  ? PAC:30540616
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G149500 0.5kb upstream 0.5kb upstream 5480 true Chr08: 11460264-11465743 Glycine max
Glyma.08G149500 0.5kb upstream 0.5kb upstream 500 false Chr08: 11465244-11465743 Glycine max
Glyma.08G149500 0.5kb downstream 0.5kb downstream 5480 true Chr08: 11459764-11465243 Glycine max
Glyma.08G149500 0.5kb downstream 0.5kb downstream 500 false Chr08: 11459764-11460263 Glycine max
Glyma.08G149500 1.0kb upstream 1.0kb upstream 5980 true Chr08: 11460264-11466243 Glycine max
Glyma.08G149500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 11465244-11466243 Glycine max
Glyma.08G149500 1.0kb downstream 1.0kb downstream 5980 true Chr08: 11459264-11465243 Glycine max
Glyma.08G149500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 11459264-11460263 Glycine max
Glyma.08G149500 2.0kb upstream 2.0kb upstream 6980 true Chr08: 11460264-11467243 Glycine max
Glyma.08G149500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 11465244-11467243 Glycine max
Glyma.08G149500 2.0kb downstream 2.0kb downstream 6980 true Chr08: 11458264-11465243 Glycine max
Glyma.08G149500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 11458264-11460263 Glycine max
Glyma.08G149500 5.0kb upstream 5.0kb upstream 9980 true Chr08: 11460264-11470243 Glycine max
Glyma.08G149500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 11465244-11470243 Glycine max
Glyma.08G149500 5.0kb downstream 5.0kb downstream 9980 true Chr08: 11455264-11465243 Glycine max
Glyma.08G149500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 11455264-11460263 Glycine max
Glyma.08G149500 10.0kb upstream 10.0kb upstream 14980 true Chr08: 11460264-11475243 Glycine max
Glyma.08G149500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 11465244-11475243 Glycine max
Glyma.08G149500 10.0kb downstream 10.0kb downstream 14980 true Chr08: 11450264-11465243 Glycine max
Glyma.08G149500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 11450264-11460263 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302029 5265 Fabidae View MSA
124037513 5270 Rosid View MSA
123742765 5271 Pentapetalae View MSA
122785974 5272 Eudicot View MSA
122051264 5273 Angiosperm View MSA
121346486 5274 Embryophyte View MSA
123424696 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.84861 0.0 20.2227    
cufflinks 7.74257 0.0 22.429    
cufflinks 3.54525 0.0 11.4559   Low
cufflinks 8.30381 0.0 23.8678    
cufflinks 9.05479 0.0 25.8028    
cufflinks 5.4888 0.0 16.6779    
cufflinks 10.7461 0.0 30.1403   High
cufflinks 9.86769 0.0 27.8027    
cufflinks 8.33125 0.0 23.9471    
cufflinks 1.563        
cufflinks 0.393       Low
cufflinks 1.289        
cufflinks 2.264        
cufflinks 3.298       High
cufflinks 0.927        
cufflinks 1.661        
cufflinks 0.699        
cufflinks 1.448        
cufflinks 1.85        
cufflinks 1.829        
cufflinks 0.454       Low
cufflinks 1.61        
cufflinks 2.023        
cufflinks 0.334       Low
cufflinks 1.904        
cufflinks 0.913        

0 Strain