Gene : Glyma.08G189500 G. max Wm82.a2.v1
Defline:  (1 of 35) 1.13.11.58 - Linoleate 9S-lipoxygenase / Linoleate 9-lipoxygenase Genomic Order:  1895
Name:  ? Glyma.08G189500 Secondary Identifier:  ? PAC:30539986
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5406 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G189500 0.5kb upstream 0.5kb upstream 6379 true Chr08: 15205864-15212242 Glycine max
Glyma.08G189500 0.5kb upstream 0.5kb upstream 500 false Chr08: 15205864-15206363 Glycine max
Glyma.08G189500 0.5kb downstream 0.5kb downstream 6379 true Chr08: 15206364-15212742 Glycine max
Glyma.08G189500 0.5kb downstream 0.5kb downstream 500 false Chr08: 15212243-15212742 Glycine max
Glyma.08G189500 1.0kb upstream 1.0kb upstream 6879 true Chr08: 15205364-15212242 Glycine max
Glyma.08G189500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 15205364-15206363 Glycine max
Glyma.08G189500 1.0kb downstream 1.0kb downstream 6879 true Chr08: 15206364-15213242 Glycine max
Glyma.08G189500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 15212243-15213242 Glycine max
Glyma.08G189500 2.0kb upstream 2.0kb upstream 7879 true Chr08: 15204364-15212242 Glycine max
Glyma.08G189500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 15204364-15206363 Glycine max
Glyma.08G189500 2.0kb downstream 2.0kb downstream 7879 true Chr08: 15206364-15214242 Glycine max
Glyma.08G189500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 15212243-15214242 Glycine max
Glyma.08G189500 5.0kb upstream 5.0kb upstream 10879 true Chr08: 15201364-15212242 Glycine max
Glyma.08G189500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 15201364-15206363 Glycine max
Glyma.08G189500 5.0kb downstream 5.0kb downstream 10879 true Chr08: 15206364-15217242 Glycine max
Glyma.08G189500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 15212243-15217242 Glycine max
Glyma.08G189500 10.0kb upstream 10.0kb upstream 15879 true Chr08: 15196364-15212242 Glycine max
Glyma.08G189500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 15196364-15206363 Glycine max
Glyma.08G189500 10.0kb downstream 10.0kb downstream 15879 true Chr08: 15206364-15222242 Glycine max
Glyma.08G189500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 15212243-15222242 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121614263 5273 Angiosperm Singleton cluster - no MSA
122248610 5265 Fabidae Singleton cluster - no MSA
123992173 5270 Rosid Singleton cluster - no MSA
123567063 5271 Pentapetalae Singleton cluster - no MSA
122601815 5272 Eudicot Singleton cluster - no MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.22274 0.0 0.835475    
cufflinks 1.70622E-5 0.0 7.04814E-4 Low Low
cufflinks 0.0593944 0.0 0.23504 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 5.22293 0.0 14.3146    
cufflinks 43.1073 0.0 127.669 High  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 10.7797 0.0 28.7589    
cufflinks 0.015     Low  
cufflinks 99.629     High High
cufflinks 0.005     Low  
cufflinks 4.566        
cufflinks 2.328        
cufflinks 29.008     High  
cufflinks 0.01     Low  
cufflinks 70.248     High High
cufflinks 0.004     Low  
cufflinks 0.003     Low Low
cufflinks 0.006     Low  
cufflinks 183.873     High High
cufflinks 0.01     Low  
cufflinks 0.013     Low  
cufflinks 195.728     High High
cufflinks 0.004     Low  
cufflinks 341.873     High High

0 Strain