Gene : Glyma.08G176000 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR13989 - REPLICATION PROTEIN A-RELATED Genomic Order:  1760
Name:  ? Glyma.08G176000 Secondary Identifier:  ? PAC:30538414
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G176000 0.5kb upstream 0.5kb upstream 1826 true Chr08: 14051730-14053555 Glycine max
Glyma.08G176000 0.5kb upstream 0.5kb upstream 500 false Chr08: 14051730-14052229 Glycine max
Glyma.08G176000 0.5kb downstream 0.5kb downstream 1826 true Chr08: 14052230-14054055 Glycine max
Glyma.08G176000 0.5kb downstream 0.5kb downstream 500 false Chr08: 14053556-14054055 Glycine max
Glyma.08G176000 1.0kb upstream 1.0kb upstream 2326 true Chr08: 14051230-14053555 Glycine max
Glyma.08G176000 1.0kb upstream 1.0kb upstream 1000 false Chr08: 14051230-14052229 Glycine max
Glyma.08G176000 1.0kb downstream 1.0kb downstream 2326 true Chr08: 14052230-14054555 Glycine max
Glyma.08G176000 1.0kb downstream 1.0kb downstream 1000 false Chr08: 14053556-14054555 Glycine max
Glyma.08G176000 2.0kb upstream 2.0kb upstream 3326 true Chr08: 14050230-14053555 Glycine max
Glyma.08G176000 2.0kb upstream 2.0kb upstream 2000 false Chr08: 14050230-14052229 Glycine max
Glyma.08G176000 2.0kb downstream 2.0kb downstream 3326 true Chr08: 14052230-14055555 Glycine max
Glyma.08G176000 2.0kb downstream 2.0kb downstream 2000 false Chr08: 14053556-14055555 Glycine max
Glyma.08G176000 5.0kb upstream 5.0kb upstream 6326 true Chr08: 14047230-14053555 Glycine max
Glyma.08G176000 5.0kb upstream 5.0kb upstream 5000 false Chr08: 14047230-14052229 Glycine max
Glyma.08G176000 5.0kb downstream 5.0kb downstream 6326 true Chr08: 14052230-14058555 Glycine max
Glyma.08G176000 5.0kb downstream 5.0kb downstream 5000 false Chr08: 14053556-14058555 Glycine max
Glyma.08G176000 10.0kb upstream 10.0kb upstream 11326 true Chr08: 14042230-14053555 Glycine max
Glyma.08G176000 10.0kb upstream 10.0kb upstream 10000 false Chr08: 14042230-14052229 Glycine max
Glyma.08G176000 10.0kb downstream 10.0kb downstream 11326 true Chr08: 14052230-14063555 Glycine max
Glyma.08G176000 10.0kb downstream 10.0kb downstream 10000 false Chr08: 14053556-14063555 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312483 5265 Fabidae View MSA
124067741 5270 Rosid View MSA
123737175 5271 Pentapetalae View MSA
122786413 5272 Eudicot View MSA
122044102 5273 Angiosperm View MSA
121345132 5274 Embryophyte View MSA
123425190 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.95845 0.0 6.85076    
cufflinks 1.6357 0.0 5.81602    
cufflinks 3.0082 0.0 10.171   High
cufflinks 1.95698 0.0 6.86244    
cufflinks 2.02518 0.0 7.01785    
cufflinks 0.840096 0.0 3.10354   Low
cufflinks 1.48658 0.0 5.30205    
cufflinks 1.79416 0.0 6.33287    
cufflinks 2.31184 0.0 7.95033    
cufflinks 0.968        
cufflinks 0.605       Low
cufflinks 2.834       High
cufflinks 1.106        
cufflinks 1.28        
cufflinks 0.934        
cufflinks 1.407        
cufflinks 0.726       Low
cufflinks 2.929       High
cufflinks 1.141        
cufflinks 2.079       High
cufflinks 0.893        
cufflinks 1.585        
cufflinks 1.351        
cufflinks 0.693       Low
cufflinks 1.563        
cufflinks 0.905        

0 Strain