Gene : Glyma.08G176500 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR34777:SF1 - VQ MOTIF-CONTAINING PROTEIN Genomic Order:  1765
Name:  ? Glyma.08G176500 Secondary Identifier:  ? PAC:30539033
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G176500 0.5kb upstream 0.5kb upstream 770 true Chr08: 14151104-14151873 Glycine max
Glyma.08G176500 0.5kb upstream 0.5kb upstream 500 false Chr08: 14151374-14151873 Glycine max
Glyma.08G176500 0.5kb downstream 0.5kb downstream 770 true Chr08: 14150604-14151373 Glycine max
Glyma.08G176500 0.5kb downstream 0.5kb downstream 500 false Chr08: 14150604-14151103 Glycine max
Glyma.08G176500 1.0kb upstream 1.0kb upstream 1270 true Chr08: 14151104-14152373 Glycine max
Glyma.08G176500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 14151374-14152373 Glycine max
Glyma.08G176500 1.0kb downstream 1.0kb downstream 1270 true Chr08: 14150104-14151373 Glycine max
Glyma.08G176500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 14150104-14151103 Glycine max
Glyma.08G176500 2.0kb upstream 2.0kb upstream 2270 true Chr08: 14151104-14153373 Glycine max
Glyma.08G176500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 14151374-14153373 Glycine max
Glyma.08G176500 2.0kb downstream 2.0kb downstream 2270 true Chr08: 14149104-14151373 Glycine max
Glyma.08G176500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 14149104-14151103 Glycine max
Glyma.08G176500 5.0kb upstream 5.0kb upstream 5270 true Chr08: 14151104-14156373 Glycine max
Glyma.08G176500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 14151374-14156373 Glycine max
Glyma.08G176500 5.0kb downstream 5.0kb downstream 5270 true Chr08: 14146104-14151373 Glycine max
Glyma.08G176500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 14146104-14151103 Glycine max
Glyma.08G176500 10.0kb upstream 10.0kb upstream 10270 true Chr08: 14151104-14161373 Glycine max
Glyma.08G176500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 14151374-14161373 Glycine max
Glyma.08G176500 10.0kb downstream 10.0kb downstream 10270 true Chr08: 14141104-14151373 Glycine max
Glyma.08G176500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 14141104-14151103 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026461 5273 Angiosperm View MSA
122297597 5265 Fabidae View MSA
124050155 5270 Rosid View MSA
123744131 5271 Pentapetalae View MSA
122770912 5272 Eudicot View MSA
121296343 5274 Embryophyte View MSA
123334522 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.302118 0.0 1.30452   Low
cufflinks 0.370391 0.0 1.58732    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.374195 0.0 1.59564    
cufflinks 0.382451 0.0 1.62995    
cufflinks 0.053     Low Low
cufflinks 1.758       High
cufflinks 0.062     Low Low
cufflinks 0.724        
cufflinks 0.18        
cufflinks 0.228        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.386        
cufflinks 0.055     Low Low
cufflinks 0.059     Low Low
cufflinks 0.065     Low Low
cufflinks 0.752        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.569       High
cufflinks 0.189        
cufflinks 0.949       High

0 Strain