Gene : Glyma.08G178900 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR23335:SF12 - CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1-RELATED Genomic Order:  1789
Name:  ? Glyma.08G178900 Secondary Identifier:  ? PAC:30537420
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G178900 0.5kb upstream 0.5kb upstream 12104 true Chr08: 14334997-14347100 Glycine max
Glyma.08G178900 0.5kb upstream 0.5kb upstream 500 false Chr08: 14346601-14347100 Glycine max
Glyma.08G178900 0.5kb downstream 0.5kb downstream 12104 true Chr08: 14334497-14346600 Glycine max
Glyma.08G178900 0.5kb downstream 0.5kb downstream 500 false Chr08: 14334497-14334996 Glycine max
Glyma.08G178900 1.0kb upstream 1.0kb upstream 12604 true Chr08: 14334997-14347600 Glycine max
Glyma.08G178900 1.0kb upstream 1.0kb upstream 1000 false Chr08: 14346601-14347600 Glycine max
Glyma.08G178900 1.0kb downstream 1.0kb downstream 12604 true Chr08: 14333997-14346600 Glycine max
Glyma.08G178900 1.0kb downstream 1.0kb downstream 1000 false Chr08: 14333997-14334996 Glycine max
Glyma.08G178900 2.0kb upstream 2.0kb upstream 13604 true Chr08: 14334997-14348600 Glycine max
Glyma.08G178900 2.0kb upstream 2.0kb upstream 2000 false Chr08: 14346601-14348600 Glycine max
Glyma.08G178900 2.0kb downstream 2.0kb downstream 13604 true Chr08: 14332997-14346600 Glycine max
Glyma.08G178900 2.0kb downstream 2.0kb downstream 2000 false Chr08: 14332997-14334996 Glycine max
Glyma.08G178900 5.0kb upstream 5.0kb upstream 16604 true Chr08: 14334997-14351600 Glycine max
Glyma.08G178900 5.0kb upstream 5.0kb upstream 5000 false Chr08: 14346601-14351600 Glycine max
Glyma.08G178900 5.0kb downstream 5.0kb downstream 16604 true Chr08: 14329997-14346600 Glycine max
Glyma.08G178900 5.0kb downstream 5.0kb downstream 5000 false Chr08: 14329997-14334996 Glycine max
Glyma.08G178900 10.0kb upstream 10.0kb upstream 21604 true Chr08: 14334997-14356600 Glycine max
Glyma.08G178900 10.0kb upstream 10.0kb upstream 10000 false Chr08: 14346601-14356600 Glycine max
Glyma.08G178900 10.0kb downstream 10.0kb downstream 21604 true Chr08: 14324997-14346600 Glycine max
Glyma.08G178900 10.0kb downstream 10.0kb downstream 10000 false Chr08: 14324997-14334996 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310987 5265 Fabidae View MSA
124071259 5270 Rosid View MSA
123742819 5271 Pentapetalae View MSA
122795418 5272 Eudicot View MSA
122048924 5273 Angiosperm View MSA
121350175 5274 Embryophyte View MSA
123427695 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.1372 0.0 42.5172    
cufflinks 8.69462 0.0 29.8221    
cufflinks 12.952 0.0 45.9693   High
cufflinks 8.62281 0.0 29.5906    
cufflinks 6.59098 0.0 22.6656   Low
cufflinks 16.0044 0.0 50.7744   High
cufflinks 9.11675 0.0 31.3871    
cufflinks 8.10815 0.0 27.8439    
cufflinks 8.7924 0.0 30.2331    
cufflinks 1.483       Low
cufflinks 3.476       High
cufflinks 2.109        
cufflinks 1.749       Low
cufflinks 1.471       Low
cufflinks 2.172        
cufflinks 2.574        
cufflinks 1.991        
cufflinks 2.324        
cufflinks 2.151        
cufflinks 2.514        
cufflinks 3.595       High
cufflinks 2.716        
cufflinks 2.215        
cufflinks 4.124       High
cufflinks 2.307        
cufflinks 2.961        

0 Strain