Gene : Glyma.08G180000 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR21649//PTHR21649:SF28 - CHLOROPHYLL A/B BINDING PROTEIN Genomic Order:  1800
Name:  ? Glyma.08G180000 Secondary Identifier:  ? PAC:30539484
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G180000 0.5kb upstream 0.5kb upstream 2548 true Chr08: 14419600-14422147 Glycine max
Glyma.08G180000 0.5kb upstream 0.5kb upstream 500 false Chr08: 14421648-14422147 Glycine max
Glyma.08G180000 0.5kb downstream 0.5kb downstream 2548 true Chr08: 14419100-14421647 Glycine max
Glyma.08G180000 0.5kb downstream 0.5kb downstream 500 false Chr08: 14419100-14419599 Glycine max
Glyma.08G180000 1.0kb upstream 1.0kb upstream 3048 true Chr08: 14419600-14422647 Glycine max
Glyma.08G180000 1.0kb upstream 1.0kb upstream 1000 false Chr08: 14421648-14422647 Glycine max
Glyma.08G180000 1.0kb downstream 1.0kb downstream 3048 true Chr08: 14418600-14421647 Glycine max
Glyma.08G180000 1.0kb downstream 1.0kb downstream 1000 false Chr08: 14418600-14419599 Glycine max
Glyma.08G180000 2.0kb upstream 2.0kb upstream 4048 true Chr08: 14419600-14423647 Glycine max
Glyma.08G180000 2.0kb upstream 2.0kb upstream 2000 false Chr08: 14421648-14423647 Glycine max
Glyma.08G180000 2.0kb downstream 2.0kb downstream 4048 true Chr08: 14417600-14421647 Glycine max
Glyma.08G180000 2.0kb downstream 2.0kb downstream 2000 false Chr08: 14417600-14419599 Glycine max
Glyma.08G180000 5.0kb upstream 5.0kb upstream 7048 true Chr08: 14419600-14426647 Glycine max
Glyma.08G180000 5.0kb upstream 5.0kb upstream 5000 false Chr08: 14421648-14426647 Glycine max
Glyma.08G180000 5.0kb downstream 5.0kb downstream 7048 true Chr08: 14414600-14421647 Glycine max
Glyma.08G180000 5.0kb downstream 5.0kb downstream 5000 false Chr08: 14414600-14419599 Glycine max
Glyma.08G180000 10.0kb upstream 10.0kb upstream 12048 true Chr08: 14419600-14431647 Glycine max
Glyma.08G180000 10.0kb upstream 10.0kb upstream 10000 false Chr08: 14421648-14431647 Glycine max
Glyma.08G180000 10.0kb downstream 10.0kb downstream 12048 true Chr08: 14409600-14421647 Glycine max
Glyma.08G180000 10.0kb downstream 10.0kb downstream 10000 false Chr08: 14409600-14419599 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311763 5265 Fabidae View MSA
124068665 5270 Rosid View MSA
123745282 5271 Pentapetalae View MSA
122788201 5272 Eudicot View MSA
122042531 5273 Angiosperm View MSA
121350849 5274 Embryophyte View MSA
123381903 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 176.002 0.0 596.538 High High
cufflinks 160.83 0.0 532.849 High High
cufflinks 40.6372 0.0 110.92 High  
cufflinks 66.0791 0.0 189.037 High  
cufflinks 9.4119 0.0 25.9444   Low
cufflinks 13.4084 0.0 36.1442    
cufflinks 64.0762 0.0 182.959 High  
cufflinks 64.9029 0.0 185.925 High  
cufflinks 5.28354 0.0 15.4951   Low
cufflinks 75.838     High  
cufflinks 1.061        
cufflinks 52.236     High  
cufflinks 0.415       Low
cufflinks 0.124       Low
cufflinks 3.503        
cufflinks 358.66     High High
cufflinks 0.312       Low
cufflinks 52.443     High  
cufflinks 105.449     High  
cufflinks 387.046     High High
cufflinks 0.932        
cufflinks 382.197     High High
cufflinks 325.811     High High
cufflinks 0.475       Low
cufflinks 409.125     High High
cufflinks 0.629        

0 Strain