Gene : Glyma.08G223300 G. max Wm82.a2.v1
Defline:  (1 of 5) 1.1.1.95 - Phosphoglycerate dehydrogenase / Phosphoglyceric acid dehydrogenase Genomic Order:  2233
Name:  ? Glyma.08G223300 Secondary Identifier:  ? PAC:30538177
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax SER-GLYSYN-PWY Glycine max pathologic  
Gmax SERSYN-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G223300 0.5kb upstream 0.5kb upstream 3208 true Chr08: 18107199-18110406 Glycine max
Glyma.08G223300 0.5kb upstream 0.5kb upstream 500 false Chr08: 18109907-18110406 Glycine max
Glyma.08G223300 0.5kb downstream 0.5kb downstream 3208 true Chr08: 18106699-18109906 Glycine max
Glyma.08G223300 0.5kb downstream 0.5kb downstream 500 false Chr08: 18106699-18107198 Glycine max
Glyma.08G223300 1.0kb upstream 1.0kb upstream 3708 true Chr08: 18107199-18110906 Glycine max
Glyma.08G223300 1.0kb upstream 1.0kb upstream 1000 false Chr08: 18109907-18110906 Glycine max
Glyma.08G223300 1.0kb downstream 1.0kb downstream 3708 true Chr08: 18106199-18109906 Glycine max
Glyma.08G223300 1.0kb downstream 1.0kb downstream 1000 false Chr08: 18106199-18107198 Glycine max
Glyma.08G223300 2.0kb upstream 2.0kb upstream 4708 true Chr08: 18107199-18111906 Glycine max
Glyma.08G223300 2.0kb upstream 2.0kb upstream 2000 false Chr08: 18109907-18111906 Glycine max
Glyma.08G223300 2.0kb downstream 2.0kb downstream 4708 true Chr08: 18105199-18109906 Glycine max
Glyma.08G223300 2.0kb downstream 2.0kb downstream 2000 false Chr08: 18105199-18107198 Glycine max
Glyma.08G223300 5.0kb upstream 5.0kb upstream 7708 true Chr08: 18107199-18114906 Glycine max
Glyma.08G223300 5.0kb upstream 5.0kb upstream 5000 false Chr08: 18109907-18114906 Glycine max
Glyma.08G223300 5.0kb downstream 5.0kb downstream 7708 true Chr08: 18102199-18109906 Glycine max
Glyma.08G223300 5.0kb downstream 5.0kb downstream 5000 false Chr08: 18102199-18107198 Glycine max
Glyma.08G223300 10.0kb upstream 10.0kb upstream 12708 true Chr08: 18107199-18119906 Glycine max
Glyma.08G223300 10.0kb upstream 10.0kb upstream 10000 false Chr08: 18109907-18119906 Glycine max
Glyma.08G223300 10.0kb downstream 10.0kb downstream 12708 true Chr08: 18097199-18109906 Glycine max
Glyma.08G223300 10.0kb downstream 10.0kb downstream 10000 false Chr08: 18097199-18107198 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306930 5265 Fabidae View MSA
124069252 5270 Rosid View MSA
123744106 5271 Pentapetalae View MSA
122795023 5272 Eudicot View MSA
122044765 5273 Angiosperm View MSA
121347094 5274 Embryophyte View MSA
123427510 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.94522 0.0 13.715   Low
cufflinks 15.3231 0.0 40.9935    
cufflinks 11.5513 0.0 30.8205    
cufflinks 84.9394 0.0 278.505 High High
cufflinks 31.3496 0.0 88.1195 High  
cufflinks 72.1634 0.0 229.184 High High
cufflinks 4.81546 0.0 13.3771   Low
cufflinks 47.4801 0.0 140.715 High  
cufflinks 20.9365 0.0 56.7966 High  
cufflinks 65.347     High High
cufflinks 0.853       Low
cufflinks 30.753     High  
cufflinks 37.546     High High
cufflinks 26.521     High  
cufflinks 0.502       Low
cufflinks 11.024     High  
cufflinks 12.064     High  
cufflinks 62.939     High High
cufflinks 28.238     High  
cufflinks 4.844        
cufflinks 1.292       Low
cufflinks 6.633        
cufflinks 7.664     High  
cufflinks 1.173       Low
cufflinks 5.687        
cufflinks 3.582        

0 Strain