Gene : Glyma.08G200400 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR32295:SF10 - CALMODULIN-BINDING FAMILY PROTEIN Genomic Order:  2004
Name:  ? Glyma.08G200400 Secondary Identifier:  ? PAC:30540937
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G200400 0.5kb upstream 0.5kb upstream 3619 true Chr08: 16204825-16208443 Glycine max
Glyma.08G200400 0.5kb upstream 0.5kb upstream 500 false Chr08: 16207944-16208443 Glycine max
Glyma.08G200400 0.5kb downstream 0.5kb downstream 3619 true Chr08: 16204325-16207943 Glycine max
Glyma.08G200400 0.5kb downstream 0.5kb downstream 500 false Chr08: 16204325-16204824 Glycine max
Glyma.08G200400 1.0kb upstream 1.0kb upstream 4119 true Chr08: 16204825-16208943 Glycine max
Glyma.08G200400 1.0kb upstream 1.0kb upstream 1000 false Chr08: 16207944-16208943 Glycine max
Glyma.08G200400 1.0kb downstream 1.0kb downstream 4119 true Chr08: 16203825-16207943 Glycine max
Glyma.08G200400 1.0kb downstream 1.0kb downstream 1000 false Chr08: 16203825-16204824 Glycine max
Glyma.08G200400 2.0kb upstream 2.0kb upstream 5119 true Chr08: 16204825-16209943 Glycine max
Glyma.08G200400 2.0kb upstream 2.0kb upstream 2000 false Chr08: 16207944-16209943 Glycine max
Glyma.08G200400 2.0kb downstream 2.0kb downstream 5119 true Chr08: 16202825-16207943 Glycine max
Glyma.08G200400 2.0kb downstream 2.0kb downstream 2000 false Chr08: 16202825-16204824 Glycine max
Glyma.08G200400 5.0kb upstream 5.0kb upstream 8119 true Chr08: 16204825-16212943 Glycine max
Glyma.08G200400 5.0kb upstream 5.0kb upstream 5000 false Chr08: 16207944-16212943 Glycine max
Glyma.08G200400 5.0kb downstream 5.0kb downstream 8119 true Chr08: 16199825-16207943 Glycine max
Glyma.08G200400 5.0kb downstream 5.0kb downstream 5000 false Chr08: 16199825-16204824 Glycine max
Glyma.08G200400 10.0kb upstream 10.0kb upstream 13119 true Chr08: 16204825-16217943 Glycine max
Glyma.08G200400 10.0kb upstream 10.0kb upstream 10000 false Chr08: 16207944-16217943 Glycine max
Glyma.08G200400 10.0kb downstream 10.0kb downstream 13119 true Chr08: 16194825-16207943 Glycine max
Glyma.08G200400 10.0kb downstream 10.0kb downstream 10000 false Chr08: 16194825-16204824 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122248474 5265 Fabidae Singleton cluster - no MSA
124075393 5270 Rosid View MSA
123755796 5271 Pentapetalae View MSA
122777016 5272 Eudicot View MSA
122049529 5273 Angiosperm View MSA
121311456 5274 Embryophyte View MSA
123348751 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.602414 0.0 3.46058    
cufflinks 4.47165 0.0 16.728   High
cufflinks 0.304043 0.0 2.09145   Low
cufflinks 0.944415 0.0 5.42747    
cufflinks 1.22079 0.0 6.2937    
cufflinks 1.08593 0.0 5.8038    
cufflinks 2.63492 0.0 10.8647   High
cufflinks 0.66694 0.0 4.08856    
cufflinks 0.995208 0.0 5.57464    
cufflinks 0.14        
cufflinks 0.049     Low Low
cufflinks 0.411        
cufflinks 0.678        
cufflinks 0.826        
cufflinks 0.031     Low Low
cufflinks 1.637       High
cufflinks 0.053     Low Low
cufflinks 0.517        
cufflinks 2.108       High
cufflinks 0.81        
cufflinks 0.096        
cufflinks 1.002        
cufflinks 1.549       High
cufflinks 0.022     Low Low
cufflinks 1.033        
cufflinks 0.149        

0 Strain