Gene : Glyma.08G239500 G. max Wm82.a2.v1

Defline:  (1 of 309) PF00010 - Helix-loop-helix DNA-binding domain (HLH) Genomic Order:  2395
Name:  ? Glyma.08G239500 Secondary Identifier:  ? PAC:30540735

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G239500 0.5kb upstream 0.5kb upstream 3451 true Chr08: 20444715-20448165 Glycine max
Glyma.08G239500 0.5kb upstream 0.5kb upstream 500 false Chr08: 20447666-20448165 Glycine max
Glyma.08G239500 0.5kb downstream 0.5kb downstream 3451 true Chr08: 20444215-20447665 Glycine max
Glyma.08G239500 0.5kb downstream 0.5kb downstream 500 false Chr08: 20444215-20444714 Glycine max
Glyma.08G239500 1.0kb upstream 1.0kb upstream 3951 true Chr08: 20444715-20448665 Glycine max
Glyma.08G239500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 20447666-20448665 Glycine max
Glyma.08G239500 1.0kb downstream 1.0kb downstream 3951 true Chr08: 20443715-20447665 Glycine max
Glyma.08G239500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 20443715-20444714 Glycine max
Glyma.08G239500 2.0kb upstream 2.0kb upstream 4951 true Chr08: 20444715-20449665 Glycine max
Glyma.08G239500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 20447666-20449665 Glycine max
Glyma.08G239500 2.0kb downstream 2.0kb downstream 4951 true Chr08: 20442715-20447665 Glycine max
Glyma.08G239500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 20442715-20444714 Glycine max
Glyma.08G239500 5.0kb upstream 5.0kb upstream 7951 true Chr08: 20444715-20452665 Glycine max
Glyma.08G239500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 20447666-20452665 Glycine max
Glyma.08G239500 5.0kb downstream 5.0kb downstream 7951 true Chr08: 20439715-20447665 Glycine max
Glyma.08G239500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 20439715-20444714 Glycine max
Glyma.08G239500 10.0kb upstream 10.0kb upstream 12951 true Chr08: 20444715-20457665 Glycine max
Glyma.08G239500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 20447666-20457665 Glycine max
Glyma.08G239500 10.0kb downstream 10.0kb downstream 12951 true Chr08: 20434715-20447665 Glycine max
Glyma.08G239500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 20434715-20444714 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299888 5265 Fabidae View MSA
124073706 5270 Rosid View MSA
123751595 5271 Pentapetalae View MSA
122793357 5272 Eudicot View MSA
122051356 5273 Angiosperm View MSA
121349754 5274 Embryophyte View MSA
123381429 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.1731 0.0 75.8883 High High
cufflinks 8.3384 0.0 25.3664   Low
cufflinks 17.7425 0.0 49.1702    
cufflinks 14.1711 0.0 40.2086    
cufflinks 14.1365 0.0 40.1335    
cufflinks 28.4297 0.0 76.5344 High High
cufflinks 10.1492 0.0 30.0976   Low
cufflinks 15.0632 0.0 42.4574    
cufflinks 23.188 0.0 63.0687 High  
cufflinks 2.595        
cufflinks 2.254        
cufflinks 4.081       High
cufflinks 2.678        
cufflinks 2.601        
cufflinks 4.414       High
cufflinks 3.111        
cufflinks 2.08       Low
cufflinks 3.395        
cufflinks 2.446        
cufflinks 3.854       High
cufflinks 2.113       Low
cufflinks 4.139       High
cufflinks 3.479        
cufflinks 1.927       Low
cufflinks 3.756        
cufflinks 1.953       Low

0 Strain