Gene : Glyma.08G233800 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR12706 - STRAWBERRY NOTCH-RELATED Genomic Order:  2338
Name:  ? Glyma.08G233800 Secondary Identifier:  ? PAC:30537105
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G233800 0.5kb upstream 0.5kb upstream 983 true Chr08: 19492325-19493307 Glycine max
Glyma.08G233800 0.5kb upstream 0.5kb upstream 500 false Chr08: 19492808-19493307 Glycine max
Glyma.08G233800 0.5kb downstream 0.5kb downstream 983 true Chr08: 19491825-19492807 Glycine max
Glyma.08G233800 0.5kb downstream 0.5kb downstream 500 false Chr08: 19491825-19492324 Glycine max
Glyma.08G233800 1.0kb upstream 1.0kb upstream 1483 true Chr08: 19492325-19493807 Glycine max
Glyma.08G233800 1.0kb upstream 1.0kb upstream 1000 false Chr08: 19492808-19493807 Glycine max
Glyma.08G233800 1.0kb downstream 1.0kb downstream 1483 true Chr08: 19491325-19492807 Glycine max
Glyma.08G233800 1.0kb downstream 1.0kb downstream 1000 false Chr08: 19491325-19492324 Glycine max
Glyma.08G233800 2.0kb upstream 2.0kb upstream 2483 true Chr08: 19492325-19494807 Glycine max
Glyma.08G233800 2.0kb upstream 2.0kb upstream 2000 false Chr08: 19492808-19494807 Glycine max
Glyma.08G233800 2.0kb downstream 2.0kb downstream 2483 true Chr08: 19490325-19492807 Glycine max
Glyma.08G233800 2.0kb downstream 2.0kb downstream 2000 false Chr08: 19490325-19492324 Glycine max
Glyma.08G233800 5.0kb upstream 5.0kb upstream 5483 true Chr08: 19492325-19497807 Glycine max
Glyma.08G233800 5.0kb upstream 5.0kb upstream 5000 false Chr08: 19492808-19497807 Glycine max
Glyma.08G233800 5.0kb downstream 5.0kb downstream 5483 true Chr08: 19487325-19492807 Glycine max
Glyma.08G233800 5.0kb downstream 5.0kb downstream 5000 false Chr08: 19487325-19492324 Glycine max
Glyma.08G233800 10.0kb upstream 10.0kb upstream 10483 true Chr08: 19492325-19502807 Glycine max
Glyma.08G233800 10.0kb upstream 10.0kb upstream 10000 false Chr08: 19492808-19502807 Glycine max
Glyma.08G233800 10.0kb downstream 10.0kb downstream 10483 true Chr08: 19482325-19492807 Glycine max
Glyma.08G233800 10.0kb downstream 10.0kb downstream 10000 false Chr08: 19482325-19492324 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027355 5273 Angiosperm View MSA
122240353 5265 Fabidae Singleton cluster - no MSA
124038799 5270 Rosid View MSA
123610991 5271 Pentapetalae View MSA
122645573 5272 Eudicot View MSA
121297021 5274 Embryophyte View MSA
123335119 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.97687 0.0 7.35109   High
cufflinks 0.832464 0.0 3.22388   Low
cufflinks 1.50099 0.0 5.69256    
cufflinks 1.15431 0.0 4.40688    
cufflinks 0.915111 0.0 3.50529    
cufflinks 0.71192 0.0 2.7698   Low
cufflinks 1.35928 0.0 5.12936    
cufflinks 1.33895 0.0 5.06544    
cufflinks 1.28703 0.0 4.87626    
cufflinks 1.195       Low
cufflinks 1.775        
cufflinks 1.691        
cufflinks 1.081       Low
cufflinks 0.857       Low
cufflinks 3.914       High
cufflinks 2.623        
cufflinks 1.038       Low
cufflinks 3.003       High
cufflinks 2.306        
cufflinks 2.532        
cufflinks 2.102        
cufflinks 2.533        
cufflinks 1.471        
cufflinks 1.727        
cufflinks 2.132        
cufflinks 1.954        

0 Strain