Gene : Glyma.08G234700 G. max Wm82.a2.v1
Defline:  (1 of 1) 2.1.1.191 - 23S rRNA (cytosine(1962)-C(5))-methyltransferase / rRNA large subunit methyltransferase I Genomic Order:  2347
Name:  ? Glyma.08G234700 Secondary Identifier:  ? PAC:30535637
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G234700 0.5kb upstream 0.5kb upstream 24451 true Chr08: 19684179-19708629 Glycine max
Glyma.08G234700 0.5kb upstream 0.5kb upstream 500 false Chr08: 19708130-19708629 Glycine max
Glyma.08G234700 0.5kb downstream 0.5kb downstream 24451 true Chr08: 19683679-19708129 Glycine max
Glyma.08G234700 0.5kb downstream 0.5kb downstream 500 false Chr08: 19683679-19684178 Glycine max
Glyma.08G234700 1.0kb upstream 1.0kb upstream 24951 true Chr08: 19684179-19709129 Glycine max
Glyma.08G234700 1.0kb upstream 1.0kb upstream 1000 false Chr08: 19708130-19709129 Glycine max
Glyma.08G234700 1.0kb downstream 1.0kb downstream 24951 true Chr08: 19683179-19708129 Glycine max
Glyma.08G234700 1.0kb downstream 1.0kb downstream 1000 false Chr08: 19683179-19684178 Glycine max
Glyma.08G234700 2.0kb upstream 2.0kb upstream 25951 true Chr08: 19684179-19710129 Glycine max
Glyma.08G234700 2.0kb upstream 2.0kb upstream 2000 false Chr08: 19708130-19710129 Glycine max
Glyma.08G234700 2.0kb downstream 2.0kb downstream 25951 true Chr08: 19682179-19708129 Glycine max
Glyma.08G234700 2.0kb downstream 2.0kb downstream 2000 false Chr08: 19682179-19684178 Glycine max
Glyma.08G234700 5.0kb upstream 5.0kb upstream 28951 true Chr08: 19684179-19713129 Glycine max
Glyma.08G234700 5.0kb upstream 5.0kb upstream 5000 false Chr08: 19708130-19713129 Glycine max
Glyma.08G234700 5.0kb downstream 5.0kb downstream 28951 true Chr08: 19679179-19708129 Glycine max
Glyma.08G234700 5.0kb downstream 5.0kb downstream 5000 false Chr08: 19679179-19684178 Glycine max
Glyma.08G234700 10.0kb upstream 10.0kb upstream 33951 true Chr08: 19684179-19718129 Glycine max
Glyma.08G234700 10.0kb upstream 10.0kb upstream 10000 false Chr08: 19708130-19718129 Glycine max
Glyma.08G234700 10.0kb downstream 10.0kb downstream 33951 true Chr08: 19674179-19708129 Glycine max
Glyma.08G234700 10.0kb downstream 10.0kb downstream 10000 false Chr08: 19674179-19684178 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301111 5265 Fabidae View MSA
124063460 5270 Rosid View MSA
123739745 5271 Pentapetalae View MSA
122788852 5272 Eudicot View MSA
122042200 5273 Angiosperm View MSA
121348163 5274 Embryophyte View MSA
123426103 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.6141 0.0 54.0793   High
cufflinks 10.7001 0.0 47.7357   High
cufflinks 4.20212 0.0 26.3584    
cufflinks 5.36998 0.0 26.2991    
cufflinks 4.75747 0.0 25.738    
cufflinks 4.13283 0.0 15.4848    
cufflinks 8.66787 0.0 36.4586   High
cufflinks 6.19376 0.0 29.4164    
cufflinks 3.91658 0.0 26.8028   Low
cufflinks 0.049     Low  
cufflinks 0.018     Low Low
cufflinks 0.051     Low  
cufflinks 0.04     Low  
cufflinks 0.049     Low  
cufflinks 0.027     Low  
cufflinks 0.127       High
cufflinks 0.03     Low  
cufflinks 0.065     Low  
cufflinks 0.093     Low  
cufflinks 0.132       High
cufflinks 0.021     Low Low
cufflinks 0.126       High
cufflinks 0.15       High
cufflinks 0.021     Low Low
cufflinks 0.143       High
cufflinks 0.018     Low Low

0 Strain