Gene : Glyma.08G277100 G. max Wm82.a2.v1
Defline:  (1 of 13) 2.2.1.7 - 1-deoxy-D-xylulose-5-phosphate synthase / DXP-synthase Genomic Order:  2771
Name:  ? Glyma.08G277100 Secondary Identifier:  ? PAC:30536137
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7560 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G277100 0.5kb upstream 0.5kb upstream 4882 true Chr08: 37091085-37095966 Glycine max
Glyma.08G277100 0.5kb upstream 0.5kb upstream 500 false Chr08: 37091085-37091584 Glycine max
Glyma.08G277100 0.5kb downstream 0.5kb downstream 4882 true Chr08: 37091585-37096466 Glycine max
Glyma.08G277100 0.5kb downstream 0.5kb downstream 500 false Chr08: 37095967-37096466 Glycine max
Glyma.08G277100 1.0kb upstream 1.0kb upstream 5382 true Chr08: 37090585-37095966 Glycine max
Glyma.08G277100 1.0kb upstream 1.0kb upstream 1000 false Chr08: 37090585-37091584 Glycine max
Glyma.08G277100 1.0kb downstream 1.0kb downstream 5382 true Chr08: 37091585-37096966 Glycine max
Glyma.08G277100 1.0kb downstream 1.0kb downstream 1000 false Chr08: 37095967-37096966 Glycine max
Glyma.08G277100 2.0kb upstream 2.0kb upstream 6382 true Chr08: 37089585-37095966 Glycine max
Glyma.08G277100 2.0kb upstream 2.0kb upstream 2000 false Chr08: 37089585-37091584 Glycine max
Glyma.08G277100 2.0kb downstream 2.0kb downstream 6382 true Chr08: 37091585-37097966 Glycine max
Glyma.08G277100 2.0kb downstream 2.0kb downstream 2000 false Chr08: 37095967-37097966 Glycine max
Glyma.08G277100 5.0kb upstream 5.0kb upstream 9382 true Chr08: 37086585-37095966 Glycine max
Glyma.08G277100 5.0kb upstream 5.0kb upstream 5000 false Chr08: 37086585-37091584 Glycine max
Glyma.08G277100 5.0kb downstream 5.0kb downstream 9382 true Chr08: 37091585-37100966 Glycine max
Glyma.08G277100 5.0kb downstream 5.0kb downstream 5000 false Chr08: 37095967-37100966 Glycine max
Glyma.08G277100 10.0kb upstream 10.0kb upstream 14382 true Chr08: 37081585-37095966 Glycine max
Glyma.08G277100 10.0kb upstream 10.0kb upstream 10000 false Chr08: 37081585-37091584 Glycine max
Glyma.08G277100 10.0kb downstream 10.0kb downstream 14382 true Chr08: 37091585-37105966 Glycine max
Glyma.08G277100 10.0kb downstream 10.0kb downstream 10000 false Chr08: 37095967-37105966 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301533 5265 Fabidae View MSA
124070864 5270 Rosid View MSA
123742318 5271 Pentapetalae View MSA
122794630 5272 Eudicot View MSA
122048955 5273 Angiosperm View MSA
121351194 5274 Embryophyte View MSA
123428527 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.708153 0.0 3.01228   Low
cufflinks 4.04429 0.0 13.4117    
cufflinks 4.03162 0.0 13.8446    
cufflinks 12.1709 0.0 41.4244   High
cufflinks 2.80487 0.0 10.2442    
cufflinks 3.24787 0.0 11.4258    
cufflinks 4.14442 0.0 15.6902    
cufflinks 9.28992 0.0 31.5862   High
cufflinks 3.16722 0.0 11.5538    
cufflinks 1.085        
cufflinks 0.997        
cufflinks 2.178       High
cufflinks 0.418        
cufflinks 0.236       Low
cufflinks 0.361        
cufflinks 0.34        
cufflinks 1.377        
cufflinks 1.929        
cufflinks 2.295       High
cufflinks 0.354        
cufflinks 0.919        
cufflinks 0.342        
cufflinks 0.202       Low
cufflinks 1.668        
cufflinks 0.35        
cufflinks 4.24       High

0 Strain