Gene : Glyma.08G279700 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR11035 - PTPLA DOMAIN PROTEIN Genomic Order:  2797
Name:  ? Glyma.08G279700 Secondary Identifier:  ? PAC:30536159
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5080 Glycine max pathologic  
Gmax PWY-6433 Glycine max pathologic  
Gmax PWY-6598 Glycine max pathologic  
Gmax PWY-7036 Glycine max pathologic  
Gmax PWY-7601 Glycine max pathologic  
Gmax PWY-7606 Glycine max pathologic  
Gmax PWY-7619 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G279700 0.5kb upstream 0.5kb upstream 4785 true Chr08: 37838500-37843284 Glycine max
Glyma.08G279700 0.5kb upstream 0.5kb upstream 500 false Chr08: 37838500-37838999 Glycine max
Glyma.08G279700 0.5kb downstream 0.5kb downstream 4785 true Chr08: 37839000-37843784 Glycine max
Glyma.08G279700 0.5kb downstream 0.5kb downstream 500 false Chr08: 37843285-37843784 Glycine max
Glyma.08G279700 1.0kb upstream 1.0kb upstream 5285 true Chr08: 37838000-37843284 Glycine max
Glyma.08G279700 1.0kb upstream 1.0kb upstream 1000 false Chr08: 37838000-37838999 Glycine max
Glyma.08G279700 1.0kb downstream 1.0kb downstream 5285 true Chr08: 37839000-37844284 Glycine max
Glyma.08G279700 1.0kb downstream 1.0kb downstream 1000 false Chr08: 37843285-37844284 Glycine max
Glyma.08G279700 2.0kb upstream 2.0kb upstream 6285 true Chr08: 37837000-37843284 Glycine max
Glyma.08G279700 2.0kb upstream 2.0kb upstream 2000 false Chr08: 37837000-37838999 Glycine max
Glyma.08G279700 2.0kb downstream 2.0kb downstream 6285 true Chr08: 37839000-37845284 Glycine max
Glyma.08G279700 2.0kb downstream 2.0kb downstream 2000 false Chr08: 37843285-37845284 Glycine max
Glyma.08G279700 5.0kb upstream 5.0kb upstream 9285 true Chr08: 37834000-37843284 Glycine max
Glyma.08G279700 5.0kb upstream 5.0kb upstream 5000 false Chr08: 37834000-37838999 Glycine max
Glyma.08G279700 5.0kb downstream 5.0kb downstream 9285 true Chr08: 37839000-37848284 Glycine max
Glyma.08G279700 5.0kb downstream 5.0kb downstream 5000 false Chr08: 37843285-37848284 Glycine max
Glyma.08G279700 10.0kb upstream 10.0kb upstream 14285 true Chr08: 37829000-37843284 Glycine max
Glyma.08G279700 10.0kb upstream 10.0kb upstream 10000 false Chr08: 37829000-37838999 Glycine max
Glyma.08G279700 10.0kb downstream 10.0kb downstream 14285 true Chr08: 37839000-37853284 Glycine max
Glyma.08G279700 10.0kb downstream 10.0kb downstream 10000 false Chr08: 37843285-37853284 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302169 5265 Fabidae View MSA
124067090 5270 Rosid View MSA
123747996 5271 Pentapetalae View MSA
122792245 5272 Eudicot View MSA
122043901 5273 Angiosperm View MSA
121347400 5274 Embryophyte View MSA
123425989 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.88029 0.0 20.9742   Low
cufflinks 29.2811 0.0 78.2613 High High
cufflinks 9.14011 0.0 26.5864    
cufflinks 16.9525 0.0 46.5017    
cufflinks 11.968 0.0 34.0081    
cufflinks 21.395 0.0 57.8566    
cufflinks 5.58544 0.0 17.5956   Low
cufflinks 15.0666 0.0 41.683    
cufflinks 14.0571 0.0 39.1157    
cufflinks 4.234        
cufflinks 0.331       Low
cufflinks 2.838        
cufflinks 3.751        
cufflinks 1.182        
cufflinks 0.167       Low
cufflinks 15.726     High High
cufflinks 2.968        
cufflinks 6.688        
cufflinks 8.549     High  
cufflinks 14.617     High High
cufflinks 0.791        
cufflinks 9.65     High  
cufflinks 17.889     High High
cufflinks 0.732       Low
cufflinks 12.669     High  
cufflinks 1.538        

0 Strain